ans =
Hauptinhalt
Results for
An attractor is called strange if it has a fractal structure, that is if it has non-integer Hausdorff dimension. This is often the case when the dynamics on it are chaotic, but strange nonchaotic attractors also exist. If a strange attractor is chaotic, exhibiting sensitive dependence on initial conditions, then any two arbitrarily close alternative initial points on the attractor, after any of various numbers of iterations, will lead to points that are arbitrarily far apart (subject to the confines of the attractor), and after any of various other numbers of iterations will lead to points that are arbitrarily close together. Thus a dynamic system with a chaotic attractor is locally unstable yet globally stable: once some sequences have entered the attractor, nearby points diverge from one another but never depart from the attractor.
The term strange attractor was coined by David Ruelle and Floris Takens to describe the attractor resulting from a series of bifurcations of a system describing fluid flow. Strange attractors are often differentiable in a few directions, but some are like a Cantor dust, and therefore not differentiable. Strange attractors may also be found in the presence of noise, where they may be shown to support invariant random probability measures of Sinai–Ruelle–Bowen type.
Lorenz
% Lorenz Attractor Parameters
sigma = 10;
beta = 8/3;
rho = 28;
% Lorenz system of differential equations
f = @(t, a) [-sigma*a(1) + sigma*a(2);
rho*a(1) - a(2) - a(1)*a(3);
-beta*a(3) + a(1)*a(2)];
% Time span
tspan = [0 100];
% Initial conditions
a0 = [1 1 1];
% Solve the system using ode45
[t, a] = ode45(f, tspan, a0);
% Plot using scatter3 with time-based color mapping
figure;
scatter3(a(:,1), a(:,2), a(:,3), 5, t, 'filled'); % 5 is the marker size
title('Lorenz Attractor');
xlabel('x(t)');
ylabel('y(t)');
zlabel('z(t)');
grid on;
colorbar; % Add a colorbar to indicate the time mapping
view(3); % Set the view to 3D
Sprott
% Define the parameters
a = 2.07;
b = 1.79;
% Define the system of differential equations
dynamics = @(t, X) [ ...
X(2) + a * X(1) * X(2) + X(1) * X(3); % dx/dt
1 - b * X(1)^2 + X(2) * X(3); % dy/dt
X(1) - X(1)^2 - X(2)^2 % dz/dt
];
% Initial conditions
X0 = [0.63; 0.47; -0.54];
% Time span
tspan = [0 100];
% Solve the system using ode45
[t, X] = ode45(dynamics, tspan, X0);
% Plot the results with color gradient
figure;
colormap(jet); % Set the colormap
c = linspace(1, 10, length(t)); % Color data based on time
% Create a 3D line plot with color based on time
for i = 1:length(t)-1
plot3(X(i:i+1,1), X(i:i+1,2), X(i:i+1,3), 'Color', [0 0.5 0.9]*c(i)/10, 'LineWidth', 1.5);
hold on;
end
% Set plot properties
title('Sprott Attractor');
xlabel('x(t)');
ylabel('y(t)');
zlabel('z(t)');
grid on;
colorbar; % Add a colorbar to indicate the time mapping
view(3); % Set the view to 3D
hold off;
Rössler
% Define the parameters
a = 0.2;
b = 0.2;
c = 5.7;
% Define the system of differential equations
dynamics = @(t, X) [ ...
-(X(2) + X(3)); % dx/dt
X(1) + a * X(2); % dy/dt
b + X(3) * (X(1) - c) % dz/dt
];
% Initial conditions
X0 = [10.0; 0.00; 10.0];
% Time span
tspan = [0 100];
% Solve the system using ode45
[t, X] = ode45(dynamics, tspan, X0);
% Plot the results
figure;
scatter3(X(:,1), X(:,2), X(:,3), 5, t, 'filled');
title('Rössler Attractor');
xlabel('x(t)');
ylabel('y(t)');
zlabel('z(t)');
grid on;
colorbar; % Add a colorbar to indicate the time mapping
view(3); % Set the view to 3D
Rabinovich-Fabrikant
%% Parameters for Rabinovich-Fabrikant Attractor
alpha = 0.14;
gamma = 0.10;
dt = 0.01;
num_steps = 5000;
% Initial conditions
x0 = -1;
y0 = 0;
z0 = 0.5;
% Preallocate arrays for performance
x = zeros(1, num_steps);
y = zeros(1, num_steps);
z = zeros(1, num_steps);
% Set initial values
x(1) = x0;
y(1) = y0;
z(1) = z0;
% Generate the attractor
for i = 1:num_steps-1
x(i+1) = x(i) + dt * (y(i)*(z(i) - 1 + x(i)^2) + gamma*x(i));
y(i+1) = y(i) + dt * (x(i)*(3*z(i) + 1 - x(i)^2) + gamma*y(i));
z(i+1) = z(i) + dt * (-2*z(i)*(alpha + x(i)*y(i)));
end
% Create a time vector for color mapping
t = linspace(0, 100, num_steps);
% Plot using scatter3
figure;
scatter3(x, y, z, 5, t, 'filled'); % 5 is the marker size
title('Rabinovich-Fabrikant Attractor');
xlabel('x(t)');
ylabel('y(t)');
zlabel('z(t)');
grid on;
colorbar; % Add a colorbar to indicate the time mapping
view(3); % Set the view to 3D
References
This project discusses predator-prey system, particularly the Lotka-Volterra equations,which model the interaction between two sprecies: prey and predators. Let's solve the Lotka-Volterra equations numerically and visualize the results.% Define parameters
% Define parameters
alpha = 1.0; % Prey birth rate
beta = 0.1; % Predator success rate
gamma = 1.5; % Predator death rate
delta = 0.075; % Predator reproduction rate
% Define the symbolic variables
syms R W
% Define the equations
eq1 = alpha * R - beta * R * W == 0;
eq2 = delta * R * W - gamma * W == 0;
% Solve the equations
equilibriumPoints = solve([eq1, eq2], [R, W]);
% Extract the equilibrium point values
Req = double(equilibriumPoints.R);
Weq = double(equilibriumPoints.W);
% Display the equilibrium points
equilibriumPointsValues = [Req, Weq]
% Solve the differential equations using ode45
lotkaVolterra = @(t,Y)[alpha*Y(1)-beta*Y(1)*Y(2);
delta*Y(1)*Y(2)-gamma*Y(2)];
% Initial conditions
R0 = 40;
W0 = 9;
Y0 = [R0, W0];
tspan = [0, 100];
% Solve the differential equations
[t, Y] = ode45(lotkaVolterra, tspan, Y0);
% Extract the populations
R = Y(:, 1);
W = Y(:, 2);
% Plot the results
figure;
subplot(2,1,1);
plot(t, R, 'r', 'LineWidth', 1.5);
hold on;
plot(t, W, 'b', 'LineWidth', 1.5);
xlabel('Time (months)');
ylabel('Population');
legend('R', 'W');
grid on;
subplot(2,1,2);
plot(R, W, 'k', 'LineWidth', 1.5);
xlabel('R');
ylabel('W');
grid on;
hold on;
plot(Req, Weq, 'ro', 'MarkerSize', 8, 'MarkerFaceColor', 'r');
legend('Phase Trajectory', 'Equilibrium Point');
Now, we need to handle a modified version of the Lotka-Volterra equations. These modified equations incorporate logistic growth fot the prey population.
These equations are:
% Define parameters
alpha = 1.0;
K = 100; % Carrying Capacity of the prey population
beta = 0.1;
gamma = 1.5;
delta = 0.075;
% Define the symbolic variables
syms R W
% Define the equations
eq1 = alpha*R*(1 - R/K) - beta*R*W == 0;
eq2 = delta*R*W - gamma*W == 0;
% Solve the equations
equilibriumPoints = solve([eq1, eq2], [R, W]);
% Extract the equilibrium point values
Req = double(equilibriumPoints.R);
Weq = double(equilibriumPoints.W);
% Display the equilibrium points
equilibriumPointsValues = [Req, Weq]
% Solve the differential equations using ode45
modified_lv = @(t,Y)[alpha*Y(1)*(1-Y(1)/K)-beta*Y(1)*Y(2);
delta*Y(1)*Y(2)-gamma*Y(2)];
% Initial conditions
R0 = 40;
W0 = 9;
Y0 = [R0, W0];
tspan = [0, 100];
% Solve the differential equations
[t, Y] = ode45(modified_lv, tspan, Y0);
% Extract the populations
R = Y(:, 1);
W = Y(:, 2);
% Plot the results
figure;
subplot(2,1,1);
plot(t, R, 'r', 'LineWidth', 1.5);
hold on;
plot(t, W, 'b', 'LineWidth', 1.5);
xlabel('Time (months)');
ylabel('Population');
legend('R', 'W');
grid on;
subplot(2,1,2);
plot(R, W, 'k', 'LineWidth', 1.5);
xlabel('R');
ylabel('W');
grid on;
hold on;
plot(Req, Weq, 'ro', 'MarkerSize', 8, 'MarkerFaceColor', 'r');
legend('Phase Trajectory', 'Equilibrium Point');
Does your company or organization require that all your Word Documents and Excel workbooks be labeled with a Microsoft Azure Information Protection label or else they can't be saved? These are the labels that are right below the tool ribbon that apply a category label such as "Public", "Business Use", or "Highly Restricted". If so, you can either
- Create and save a "template file" with the desired label and then call copyfile to make a copy of that file and then write your results to the new copy, or
- If using Windows you can create and/or open the file using ActiveX and then apply the desired label from your MATLAB program's code.
For #1 you can do
copyfile(templateFileName, newDataFileName);
writematrix(myData, newDataFileName);
If the template has the AIP label applied to it, then the copy will also inherit the same label.
For #2, here is a demo for how to apply the code using ActiveX.
% Test to set the Microsoft Azure Information Protection label on an Excel workbook.
% Reference support article:
% https://www.mathworks.com/matlabcentral/answers/1901140-why-does-azure-information-protection-popup-pause-the-matlab-script-when-i-use-actxserver?s_tid=ta_ans_results
clc; % Clear the command window.
close all; % Close all figures (except those of imtool.)
clear; % Erase all existing variables. Or clearvars if you want.
workspace; % Make sure the workspace panel is showing.
format compact;
% Define your workbook file name.
excelFullFileName = fullfile(pwd, '\testAIP.xlsx');
% Make sure it exists. Open Excel as an ActiveX server if it does.
if isfile(excelFullFileName)
% If the workbook exists, launch Excel as an ActiveX server.
Excel = actxserver('Excel.Application');
Excel.visible = true; % Make the server visible.
fprintf('Excel opened successfully.\n');
fprintf('Your workbook file exists:\n"%s".\nAbout to try to open it.\n', excelFullFileName);
% Open up the existing workbook named in the variable fullFileName.
Excel.Workbooks.Open(excelFullFileName);
fprintf('Excel opened file successfully.\n');
else
% File does not exist. Alert the user.
warningMessage = sprintf('File does not exist:\n\n"%s"\n', excelFullFileName);
fprintf('%s\n', warningMessage);
errordlg(warningMessage);
return;
end
% If we get here, the workbook file exists and has been opened by Excel.
% Ask Excel for the Microsoft Azure Information Protection (AIP) label of the workbook we just opened.
label = Excel.ActiveWorkbook.SensitivityLabel.GetLabel
% See if there is a label already. If not, these will be null:
existingLabelID = label.LabelId
existingLabelName = label.LabelName
% Create a label.
label = Excel.ActiveWorkbook.SensitivityLabel.CreateLabelInfo
label.LabelId = "a518e53f-798e-43aa-978d-c3fda1f3a682";
label.LabelName = "Business Use";
% Assign the label to the workbook.
fprintf('Setting Microsoft Azure Information Protection to "Business Use", GUID of a518e53f-798e-43aa-978d-c3fda1f3a682\n');
Excel.ActiveWorkbook.SensitivityLabel.SetLabel(label, label);
% Save this workbook with the new AIP setting we just created.
Excel.ActiveWorkbook.Save;
% Shut down Excel.
Excel.ActiveWorkbook.Close;
Excel.Quit;
% Excel is now closed down. Delete the variable from the MATLAB workspace.
clear Excel;
% Now check to see if the AIP label has been set
% by opening up the file in Excel and looking at the AIP banner.
winopen(excelFullFileName)
Note that there is a line in there that gets an AIP label from the existing workbook, if there is one at all. If there is not one, you can set one. But to determine what the proper LabelId (that crazy long hexadecimal number) should be, you will probably need to open an existing document that already has the label that you want set (applied to it) and then read that label with this line:
label = Excel.ActiveWorkbook.SensitivityLabel.GetLabel
This stems purely from some play on my part. Suppose I asked you to work with the sequence formed as 2*n*F_n + 1, where F_n is the n'th Fibonacci number? Part of me would not be surprised to find there is nothing simple we could do. But, then it costs nothing to try, to see where MATLAB can take me in an explorative sense.
n = sym(0:100).';
Fn = fibonacci(n);
Sn = 2*n.*Fn + 1;
Sn(1:10) % A few elements
For kicks, I tried asking ChatGPT. Giving it nothing more than the first 20 members of thse sequence as integers, it decided this is a Perrin sequence, and gave me a recurrence relation, but one that is in fact incorrect. Good effort from the Ai, but a fail in the end.
Is there anything I can do? Try null! (Look carefully at the array generated by Toeplitz. It is at least a pretty way to generate the matrix I needed.)
X = toeplitz(Sn,[1,zeros(1,4)]);
rank(X(5:end,:))
Hmm. So there is no linear combination of those columns that yields all zeros, since the resulting matrix was full rank.
X = toeplitz(Sn,[1,zeros(1,5)]);
rank(X(6:end,:))
But if I take it one step further, we see the above matrix is now rank deficient. What does that tell me? It says there is some simple linear combination of the columns of X(6:end,:) that always yields zero. The previous test tells me there is no shorter constant coefficient recurrence releation, using fewer terms.
null(X(6:end,:))
Let me explain what those coefficients tell me. In fact, they yield a very nice recurrence relation for the sequence S_n, not unlike the original Fibonacci sequence it was based upon.
S(n+1) = 3*S(n) - S_(n-1) - 3*S(n-2) + S(n-3) + S(n-4)
where the first 5 members of that sequence are given as [1 3 5 13 25]. So a 6 term linear constant coefficient recurrence relation. If it reminds you of the generating relation for the Fibonacci sequence, that is good, because it should. (Remember I started the sequence at n==0, IF you decide to test it out.) We can test it out, like this:
SfunM = memoize(@(N) Sfun(N));
SfunM(25)
2*25*fibonacci(sym(25)) + 1
And indeed, it works as expected.
function Sn = Sfun(n)
switch n
case 0
Sn = 1;
case 1
Sn = 3;
case 2
Sn = 5;
case 3
Sn = 13;
case 4
Sn = 25;
otherwise
Sn = Sfun(n-5) + Sfun(n-4) - 3*Sfun(n-3) - Sfun(n-2) +3*Sfun(n-1);
end
end
A beauty of this, is I started from nothing but a sequence of integers, derived from an expression where I had no rational expectation of finding a formula, and out drops something pretty. I might call this explorational mathematics.
The next step of course is to go in the other direction. That is, given the derived recurrence relation, if I substitute the formula for S_n in terms of the Fibonacci numbers, can I prove it is valid in general? (Yes.) After all, without some proof, it may fail for n larger than 100. (I'm not sure how much I can cram into a single discussion, so I'll stop at this point for now. If I see interest in the ideas here, I can proceed further. For example, what was I doing with that sequence in the first place? And of course, can I prove the relation is valid? Can I do so using MATLAB?)
(I'll be honest, starting from scratch, I'm not sure it would have been obvious to find that relation, so null was hugely useful here.)
We are modeling the introduction of a novel pathogen into a completely susceptible population. In the cells below, I have provided you with the Matlab code for a simple stochastic SIR model, implemented using the "GillespieSSA" function
Simulating the stochastic model 100 times for 
Since γ is 0.4 per day, 
per day
per day% Define the parameters
beta = 0.36;
gamma = 0.4;
n_sims = 100;
tf = 100; % Time frame changed to 100
% Calculate R0
R0 = beta / gamma
% Initial state values
initial_state_values = [1000000; 1; 0; 0]; % S, I, R, cum_inc
% Define the propensities and state change matrix
a = @(state) [beta * state(1) * state(2) / 1000000, gamma * state(2)];
nu = [-1, 0; 1, -1; 0, 1; 0, 0];
% Define the Gillespie algorithm function
function [t_values, state_values] = gillespie_ssa(initial_state, a, nu, tf)
t = 0;
state = initial_state(:); % Ensure state is a column vector
t_values = t;
state_values = state';
while t < tf
rates = a(state);
rate_sum = sum(rates);
if rate_sum == 0
break;
end
tau = -log(rand) / rate_sum;
t = t + tau;
r = rand * rate_sum;
cum_sum_rates = cumsum(rates);
reaction_index = find(cum_sum_rates >= r, 1);
state = state + nu(:, reaction_index);
% Update cumulative incidence if infection occurred
if reaction_index == 1
state(4) = state(4) + 1; % Increment cumulative incidence
end
t_values = [t_values; t];
state_values = [state_values; state'];
end
end
% Function to simulate the stochastic model multiple times and plot results
function simulate_stoch_model(beta, gamma, n_sims, tf, initial_state_values, R0, plot_type)
% Define the propensities and state change matrix
a = @(state) [beta * state(1) * state(2) / 1000000, gamma * state(2)];
nu = [-1, 0; 1, -1; 0, 1; 0, 0];
% Set random seed for reproducibility
rng(11);
% Initialize plot
figure;
hold on;
for i = 1:n_sims
[t, output] = gillespie_ssa(initial_state_values, a, nu, tf);
% Check if the simulation had only one step and re-run if necessary
while length(t) == 1
[t, output] = gillespie_ssa(initial_state_values, a, nu, tf);
end
if strcmp(plot_type, 'cumulative_incidence')
plot(t, output(:, 4), 'LineWidth', 2, 'Color', rand(1, 3));
elseif strcmp(plot_type, 'prevalence')
plot(t, output(:, 2), 'LineWidth', 2, 'Color', rand(1, 3));
end
end
xlabel('Time (days)');
if strcmp(plot_type, 'cumulative_incidence')
ylabel('Cumulative Incidence');
ylim([0 inf]);
elseif strcmp(plot_type, 'prevalence')
ylabel('Prevalence of Infection');
ylim([0 50]);
end
title(['Stochastic model output for R0 = ', num2str(R0)]);
subtitle([num2str(n_sims), ' simulations']);
xlim([0 tf]);
grid on;
hold off;
end
% Simulate the model 100 times and plot cumulative incidence
simulate_stoch_model(beta, gamma, n_sims, tf, initial_state_values, R0, 'cumulative_incidence');
% Simulate the model 100 times and plot prevalence
simulate_stoch_model(beta, gamma, n_sims, tf, initial_state_values, R0, 'prevalence');
Base case:
Suppose you need to do a computation many times. We are going to assume that this computation cannot be vectorized. The simplest case is to use a for loop:
number_of_elements = 1e6;
test_fcn = @(x) sqrt(x) / x;
tic
for i = 1:number_of_elements
x(i) = test_fcn(i);
end
t_forward = toc;
disp(t_forward + " seconds")
Preallocation:
This can easily be sped up by preallocating the variable that houses results:
tic
x = zeros(number_of_elements, 1);
for i = 1:number_of_elements
x(i) = test_fcn(i);
end
t_forward_prealloc = toc;
disp(t_forward_prealloc + " seconds")
In this example, preallocation speeds up the loop by a factor of about three to four (running in R2024a). Comment below if you get dramatically different results.
disp(sprintf("%.1f", t_forward / t_forward_prealloc))
Run it in reverse:
Is there a way to skip the explicit preallocation and still be fast? Indeed, there is.
clear x
tic
for i = number_of_elements:-1:1
x(i) = test_fcn(i);
end
t_backward = toc;
disp(t_backward + " seconds")
By running the loop backwards, the preallocation is implicitly performed during the first iteration and the loop runs in about the same time (within statistical noise):
disp(sprintf("%.2f", t_forward_prealloc / t_backward))
Do you get similar results when running this code? Let us know your thoughts in the comments below.
Beneficial side effect:
Have you ever had to use a for loop to delete elements from a vector? If so, keeping track of index offsets can be tricky, as deleting any element shifts all those that come after. By running the for loop in reverse, you don't need to worry about index offsets while deleting elements.
Many times when ploting, we not only need to set the color of the plot, but also its
transparency, Then how we set the alphaData of colorbar at the same time ?
It seems easy to do so :
data = rand(12,12);
% Transparency range 0-1, .3-1 for better appearance here
AData = rescale(- data, .3, 1);
% Draw an imagesc with numerical control over colormap and transparency
imagesc(data, 'AlphaData',AData);
colormap(jet);
ax = gca;
ax.DataAspectRatio = [1,1,1];
ax.TickDir = 'out';
ax.Box = 'off';
% get colorbar object
CBarHdl = colorbar;
pause(1e-16)
% Modify the transparency of the colorbar
CData = CBarHdl.Face.Texture.CData;
ALim = [min(min(AData)), max(max(AData))];
CData(4,:) = uint8(255.*rescale(1:size(CData, 2), ALim(1), ALim(2)));
CBarHdl.Face.Texture.ColorType = 'TrueColorAlpha';
CBarHdl.Face.Texture.CData = CData;
But !!!!!!!!!!!!!!! We cannot preserve the changes when saving them as images ：
It seems that when saving plots, the `Texture` will be refresh, but the `Face` will not :
however, object Face only have 4 colors to change(The four corners of a quadrilateral), how
can we set more colors ??
`Face` is a quadrilateral object, and we can change the `VertexData` to draw more than one little quadrilaterals:
data = rand(12,12);
% Transparency range 0-1, .3-1 for better appearance here
AData = rescale(- data, .3, 1);
%Draw an imagesc with numerical control over colormap and transparency
imagesc(data, 'AlphaData',AData);
colormap(jet);
ax = gca;
ax.DataAspectRatio = [1,1,1];
ax.TickDir = 'out';
ax.Box = 'off';
% get colorbar object
CBarHdl = colorbar;
pause(1e-16)
% Modify the transparency of the colorbar
CData = CBarHdl.Face.Texture.CData;
ALim = [min(min(AData)), max(max(AData))];
CData(4,:) = uint8(255.*rescale(1:size(CData, 2), ALim(1), ALim(2)));
warning off
CBarHdl.Face.ColorType = 'TrueColorAlpha';
VertexData = CBarHdl.Face.VertexData;
tY = repmat((1:size(CData,2))./size(CData,2), [4,1]);
tY1 = tY(:).'; tY2 = tY - tY(1,1); tY2(3:4,:) = 0; tY2 = tY2(:).';
tM1 = [tY1.*0 + 1; tY1; tY1.*0 + 1];
tM2 = [tY1.*0; tY2; tY1.*0];
CBarHdl.Face.VertexData = repmat(VertexData, [1,size(CData,2)]).*tM1 + tM2;
CBarHdl.Face.ColorData = reshape(repmat(CData, [4,1]), 4, []);
The higher the value, the more transparent it becomes
data = rand(12,12);
AData = rescale(- data, .3, 1);
imagesc(data, 'AlphaData',AData);
colormap(jet);
ax = gca;
ax.DataAspectRatio = [1,1,1];
ax.TickDir = 'out';
ax.Box = 'off';
CBarHdl = colorbar;
pause(1e-16)
CData = CBarHdl.Face.Texture.CData;
ALim = [min(min(AData)), max(max(AData))];
CData(4,:) = uint8(255.*rescale(size(CData, 2):-1:1, ALim(1), ALim(2)));
warning off
CBarHdl.Face.ColorType = 'TrueColorAlpha';
VertexData = CBarHdl.Face.VertexData;
tY = repmat((1:size(CData,2))./size(CData,2), [4,1]);
tY1 = tY(:).'; tY2 = tY - tY(1,1); tY2(3:4,:) = 0; tY2 = tY2(:).';
tM1 = [tY1.*0 + 1; tY1; tY1.*0 + 1];
tM2 = [tY1.*0; tY2; tY1.*0];
CBarHdl.Face.VertexData = repmat(VertexData, [1,size(CData,2)]).*tM1 + tM2;
CBarHdl.Face.ColorData = reshape(repmat(CData, [4,1]), 4, []);
More transparent in the middle
data = rand(12,12) - .5;
AData = rescale(abs(data), .1, .9);
imagesc(data, 'AlphaData',AData);
colormap(jet);
ax = gca;
ax.DataAspectRatio = [1,1,1];
ax.TickDir = 'out';
ax.Box = 'off';
CBarHdl = colorbar;
pause(1e-16)
CData = CBarHdl.Face.Texture.CData;
ALim = [min(min(AData)), max(max(AData))];
CData(4,:) = uint8(255.*rescale(abs((1:size(CData, 2)) - (1 + size(CData, 2))/2), ALim(1), ALim(2)));
warning off
CBarHdl.Face.ColorType = 'TrueColorAlpha';
VertexData = CBarHdl.Face.VertexData;
tY = repmat((1:size(CData,2))./size(CData,2), [4,1]);
tY1 = tY(:).'; tY2 = tY - tY(1,1); tY2(3:4,:) = 0; tY2 = tY2(:).';
tM1 = [tY1.*0 + 1; tY1; tY1.*0 + 1];
tM2 = [tY1.*0; tY2; tY1.*0];
CBarHdl.Face.VertexData = repmat(VertexData, [1,size(CData,2)]).*tM1 + tM2;
CBarHdl.Face.ColorData = reshape(repmat(CData, [4,1]), 4, []);
The code will work if the plot have AlphaData property
data = peaks(30);
AData = rescale(data, .2, 1);
surface(data, 'FaceAlpha','flat','AlphaData',AData);
colormap(jet(100));
ax = gca;
ax.DataAspectRatio = [1,1,1];
ax.TickDir = 'out';
ax.Box = 'off';
view(3)
CBarHdl = colorbar;
pause(1e-16)
CData = CBarHdl.Face.Texture.CData;
ALim = [min(min(AData)), max(max(AData))];
CData(4,:) = uint8(255.*rescale(1:size(CData, 2), ALim(1), ALim(2)));
warning off
CBarHdl.Face.ColorType = 'TrueColorAlpha';
VertexData = CBarHdl.Face.VertexData;
tY = repmat((1:size(CData,2))./size(CData,2), [4,1]);
tY1 = tY(:).'; tY2 = tY - tY(1,1); tY2(3:4,:) = 0; tY2 = tY2(:).';
tM1 = [tY1.*0 + 1; tY1; tY1.*0 + 1];
tM2 = [tY1.*0; tY2; tY1.*0];
CBarHdl.Face.VertexData = repmat(VertexData, [1,size(CData,2)]).*tM1 + tM2;
CBarHdl.Face.ColorData = reshape(repmat(CData, [4,1]), 4, []);
How to leave feedback on a doc page
Leaving feedback is a two-step process. At the bottom of most pages in the MATLAB documentation is a star rating.
Start by selecting a star that best answers the question. After selecting a star rating, an edit box appears where you can offer specific feedback.
When you press "Submit" you'll see the confirmation dialog below. You cannot go back and edit your content, although you can refresh the page to go through that process again.
Tips on leaving feedback
- Be productive. The reader should clearly understand what action you'd like to see, what was unclear, what you think needs work, or what areas were really helpful.
- Positive feedback is also helpful. By nature, feedback often focuses on suggestions for changes but it also helps to know what was clear and what worked well.
- Point to specific areas of the page. This helps the reader to narrow the focus of the page to the area described by your feedback.
What happens to that feedback?
Before working at MathWorks I often left feedback on documentation pages but I never knew what happens after that. One day in 2021 I shared my speculation on the process:
> That feedback is received by MathWorks Gnomes which are never seen nor heard but visit the MathWorks documentation team at night while they are sleeping and whisper selected suggestions into their ears to manipulate their dreams. Occassionally this causes them to wake up with a Eureka moment that leads to changes in the documentation.
I'd like to let you in on the secret which is much less fanciful. Feedback left in the star rating and edit box are collected and periodically reviewed by the doc writers who look for trends on highly trafficked pages and finer grain feedback on less visited pages. Your feedback is important and often results in improvements.
A colleague said that you can search the Help Center using the phrase 'Introduced in' followed by a release version. Such as, 'Introduced in R2022a'. Doing this yeilds search results specific for that release.
Seems pretty handy so I thought I'd share.
Bringing the beauty of MathWorks Natick's tulips to life through code!
Remix challenge: create and share with us your new breeds of MATLAB tulips!
From Alpha Vantage's website: API Documentation | Alpha Vantage
Try using the built-in Matlab function webread(URL)... for example:
% copy a URL from the examples on the site
URL = 'https://www.alphavantage.co/query?function=TIME_SERIES_DAILY&symbol=IBM&apikey=demo'
% or use the pattern to create one
tickers = [{'IBM'} {'SPY'} {'DJI'} {'QQQ'}]; i = 1;
URL = ...
['https://www.alphavantage.co/query?function=TIME_SERIES_DAILY_ADJUSTED&outputsize=full&symbol=', ...
+ tickers{i}, ...
+ '&apikey=***Put Your API Key here***'];
X = webread(URL);
You can access any of the data available on the site as per the Alpha Vantage documentation using these two lines of code but with different designations for the requested data as per the documentation.
It's fun!
This cheat sheet is here:
reference:
- https://github.com/peijin94/matlabPlotCheatsheet
- https://github.com/mathworks/visualization-cheat-sheet
- https://www.mathworks.com/products/matlab/plot-gallery.html
- https://www.mathworks.com/help/matlab/release-notes.html
MATLAB used to have official visualization-cheat-sheet, but there have been quite a few new updates in MATLAB versions recently. Therefore, I made my own cheat sheet and marked the versions of each new thing that were released :
Dear MATLAB contest enthusiasts,
I believe many of you have been captivated by the innovative entries from Zhaoxu Liu / slanderer, in the 2023 MATLAB Flipbook Mini Hack contest.
Ever wondered about the person behind these creative entries? What drives a MATLAB user to such levels of skill? And what inspired his participation in the contest? We were just as curious as you are!
We were delighted to catch up with him and learn more about his use of MATLAB. The interview has recently been published in MathWorks Blogs. For an in-depth look into his insights and experiences, be sure to read our latest blog post: Community Q&A – Zhaoxu Liu.
But the conversation doesn't end here! Who would you like to see featured in our next interview? Drop their name in the comments section below and let us know who we should reach out to next!
Temporary print statements are often helpful during debugging but it's easy to forget to remove the statements or sometimes you may not have writing privileges for the file. This tip uses conditional breakpoints to add print statements without ever editing the file!
What are conditional breakpoints?
Conditional breakpoints allow you to write a conditional statement that is executed when the selected line is hit and if the condition returns true, MATLAB pauses at that line. Otherwise, it continues.
The Hack: use ~fprintf() as the condition
fprintf prints information to the command window and returns the size of the message in bytes. The message size will always be greater than 0 which will always evaluate as true when converted to logical. Therefore, by negating an fprintf statement within a conditional breakpoint, the fprintf command will execute, print to the command window, and evalute as false which means the execution will continue uninterupted!
How to set a conditional break point
1. Right click the line number where you want the condition to be evaluated and select "Set Conditional Breakpoint"
2. Enter a valid MATLAB expression that returns a logical scalar value in the editor dialog.
Handy one-liners
Check if a line is reached: Don't forget the negation (~) and the line break (\n)!
~fprintf('Entered callback function\n')
Display the call stack from the break point line: one of my favorites!
~fprintf('%s\n',formattedDisplayText(struct2table(dbstack)))
Inspect variable values: For scalar values,
~fprintf('v = %.5f\n', v)
~fprintf('%s\n', formattedDisplayText(v)).
Make sense of frequent hits: In some situations such as responses to listeners or interactive callbacks, a line can be executed 100s of times per second. Incorporate a timestamp to differentiate messages during rapid execution.
~fprintf('WindowButtonDownFcn - %s\n', datetime('now'))
Closing
This tip not only keeps your code clean but also offers a dynamic way to monitor code execution and variable states without permanent modifications. Interested in digging deeper? @Steve Eddins takes this tip to the next level with his Code Trace for MATLAB tool available on the File Exchange (read more).
Summary animation
To reproduce the events in this animation:
% buttonDownFcnDemo.m
fig = figure();
tcl = tiledlayout(4,4,'TileSpacing','compact');
for i = 1:16
ax = nexttile(tcl);
title(ax,"#"+string(i))
ax.ButtonDownFcn = @axesButtonDownFcn;
xlim(ax,[-1 1])
ylim(ax,[-1,1])
hold(ax,'on')
end
function axesButtonDownFcn(obj,event)
colors = lines(16);
plot(obj,event.IntersectionPoint(1),event.IntersectionPoint(2),...
'ko','MarkerFaceColor',colors(obj.Layout.Tile,:))
end
The beautiful and elegant chord diagrams were all created using MATLAB?
Indeed, they were all generated using the chord diagram plotting toolkit that I developed myself:
- - Chord chart: [chord chart](https://www.mathworks.com/matlabcentral/fileexchange/116550-chord-chart)
- - Directed graph chord chart: [digraph chord chart]:(https://www.mathworks.com/matlabcentral/fileexchange/121043-digraph-chord-chart)
You can download these toolkits from the provided links.
The reason for writing this article is that many people have started using the chord diagram plotting toolkit that I developed. However, some users are unsure about customizing certain styles. As the developer, I have a good understanding of the implementation principles of the toolkit and can apply it flexibly. This has sparked the idea of challenging myself to create various styles of chord diagrams. Currently, the existing code is quite lengthy. In the future, I may integrate some of this code into the toolkit, enabling users to achieve the effects of many lines of code with just a few lines.
Without further ado, let's see the extent to which this MATLAB toolkit can currently perform.
demo 1
rng(2)
dataMat = randi([0,5], [11,5]);
dataMat(1:6,1) = 0;
dataMat([11,7],1) = [45,25];
dataMat([1,4,5,7],2) = [20,20,30,30];
dataMat(:,3) = 0;
dataMat(6,3) = 45;
dataMat(1:5,4) = 0;
dataMat([6,7],4) = [25,25];
dataMat([5,6,9],5) = [25,25,25];
colName = {'Fly', 'Beetle', 'Leaf', 'Soil', 'Waxberry'};
rowName = {'Bartomella', 'Bradyrhizobium', 'Dysgomonas', 'Enterococcus',...
'Lactococcus', 'norank', 'others', 'Pseudomonas', 'uncultured',...
'Vibrionimonas', 'Wolbachia'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.7765 0.8118 0.5216; 0.4431 0.4706 0.3843; 0.5804 0.2275 0.4549;
0.4471 0.4039 0.6745; 0.0157 0 0 ];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.5843 0.6863 0.7843; 0.1098 0.1647 0.3255; 0.0902 0.1608 0.5373;
0.6314 0.7961 0.2118; 0.0392 0.2078 0.1059; 0.0157 0 0 ;
0.8549 0.9294 0.8745; 0.3882 0.3255 0.4078; 0.5020 0.7216 0.3843;
0.0902 0.1843 0.1804; 0.8196 0.2314 0.0706];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.5)
end
end
CC.tickState('on')
CC.labelRotate('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
% CC.labelRotate('off')
% textHdl = findobj(gca,'Tag','ChordLabel');
% for i = 1:length(textHdl)
% if textHdl(i).Position(2) < 0
% if abs(textHdl(i).Position(1)) > .7
% textHdl(i).Rotation = textHdl(i).Rotation + 45;
% textHdl(i).HorizontalAlignment = 'right';
% if textHdl(i).Rotation > 90
% textHdl(i).Rotation = textHdl(i).Rotation + 180;
% textHdl(i).HorizontalAlignment = 'left';
% end
% else
% textHdl(i).Rotation = textHdl(i).Rotation + 10;
% textHdl(i).HorizontalAlignment = 'right';
% end
% end
% end
demo 2
rng(3)
dataMat = randi([1,15], [7,22]);
dataMat(dataMat < 11) = 0;
dataMat(1, sum(dataMat, 1) == 0) = 15;
colName = {'A2M', 'FGA', 'FGB', 'FGG', 'F11', 'KLKB1', 'SERPINE1', 'VWF',...
'THBD', 'TFPI', 'PLAT', 'SERPINA5', 'SERPIND1', 'F2', 'PLG', 'F12',...
'SERPINC1', 'SERPINA1', 'PROS1', 'SERPINF2', 'F13A1', 'PROC'};
rowName = {'Lung', 'Spleen', 'Liver', 'Heart',...
'Renal cortex', 'Renal medulla', 'Thyroid'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.21);
CC = CC.draw();
CC.labelRotate('on')
% 单独设置每一个弦末端方块(Set individual end blocks for each chord)
% Use obj.setEachSquareF_Prop
% or obj.setEachSquareT_Prop
% F means from (blocks below)
% T means to (blocks above)
CListT = [173,70,65; 79,135,136]./255;
% Upregulated:1 | Downregulated:2
Regulated = rand([7, 22]);
Regulated = (Regulated < .8) + 1;
for i = 1:size(Regulated, 1)
for j = 1:size(Regulated, 2)
CC.setEachSquareT_Prop(i, j, 'FaceColor', CListT(Regulated(i,j),:))
end
end
% 绘制图例(Draw legend)
H1 = fill([0,1,0] + 100, [1,0,1] + 100, CListT(1,:), 'EdgeColor','none');
H2 = fill([0,1,0] + 100, [1,0,1] + 100, CListT(2,:), 'EdgeColor','none');
lgdHdl = legend([H1,H2], {'Upregulated','Downregulated'}, 'AutoUpdate','off', 'Location','best');
lgdHdl.ItemTokenSize = [12,12];
lgdHdl.Box = 'off';
lgdHdl.FontSize = 13;
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [128,108,171; 222,208,161; 180,196,229; 209,150,146; 175,201,166;
134,156,118; 175,175,173]./255;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListF(i,:), 'FaceAlpha',.45)
end
end
demo 3
dataMat = rand([15,15]);
dataMat(dataMat > .15) = 0;
CList = [ 75,146,241; 252,180, 65; 224, 64, 10; 5,100,146; 191,191,191;
26, 59,105; 255,227,130; 18,156,221; 202,107, 75; 0, 92,219;
243,210,136; 80, 99,129; 241,185,168; 224,131, 10; 120,147,190]./255;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17, 'Color',[0,0,.8])
demo 4
rng(5)
dataMat = randi([1,20], [5,5]);
dataMat(1,1) = 110;
dataMat(2,2) = 40;
dataMat(3,3) = 50;
dataMat(5,5) = 50;
CList1 = [164,190,158; 216,213,153; 177,192,208; 238,238,227; 249,217,153]./255;
CList2 = [247,204,138; 128,187,185; 245,135,124; 140,199,197; 252,223,164]./255;
CList = CList2;
NameList={'CHORD','CHART','MADE','BY','SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/30, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7, 'EdgeColor',CList(i,:)./1.1)
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.7)
end
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
BCC.tickLabelState('on')
BCC.setTickFont('FontName','Cambria', 'FontSize',9)
demo 5
dataMat=randi([1,20], [14,3]);
dataMat(11:14,1) = 0;
dataMat(6:10,2) = 0;
dataMat(1:5,3) = 0;
colName = compose('C%d', 1:3);
rowName = [compose('A%d', 1:7), compose('B%d', 7:-1:1)];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',[190,190,190]./255)
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF=[255,244,138; 253,220,117; 254,179, 78; 253,190, 61;
252, 78, 41; 228, 26, 26; 178, 0, 36; 4, 84,119;
1,113,137; 21,150,155; 67,176,173; 68,173,158;
123,204,163; 184,229,162]./255;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListF(i,:), 'FaceAlpha',.5)
end
end
CC.tickState('on')
CC.tickLabelState('on')
demo 6
rng(2)
dataMat = randi([0,40], [20,4]);
dataMat(rand([20,4]) < .2) = 0;
dataMat(1,3) = 500;
dataMat(20,1:4) = [140; 150; 80; 90];
colName = compose('T%d', 1:4);
rowName = compose('SL%d', 1:20);
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.23);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.62,0.49,0.27; 0.28,0.57,0.76
0.25,0.53,0.30; 0.86,0.48,0.34];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.94,0.84,0.60; 0.16,0.50,0.67; 0.92,0.62,0.49;
0.48,0.44,0.60; 0.48,0.44,0.60; 0.71,0.79,0.73;
0.96,0.98,0.98; 0.51,0.82,0.95; 0.98,0.70,0.82;
0.97,0.85,0.84; 0.55,0.64,0.62; 0.94,0.93,0.60;
0.98,0.90,0.85; 0.72,0.84,0.81; 0.85,0.45,0.49;
0.76,0.76,0.84; 0.59,0.64,0.62; 0.62,0.14,0.15;
0.75,0.75,0.75; 1.00,1.00,1.00];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
CC.setSquareF_N(size(dataMat, 1), 'EdgeColor','k', 'LineWidth',1)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.46)
end
end
CC.tickState('on')
CC.labelRotate('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
demo 7
dataMat = randi([10,10000], [10,10]);
dataMat(6:10,:) = 0;
dataMat(:,1:5) = 0;
NameList = {'BOC', 'ICBC', 'ABC', 'BOCM', 'CCB', ...
'yama', 'nikoto', 'saki', 'koto', 'kawa'};
CList = [0.63,0.75,0.88
0.67,0.84,0.75
0.85,0.78,0.88
1.00,0.92,0.93
0.92,0.63,0.64
0.57,0.67,0.75
1.00,0.65,0.44
0.72,0.73,0.40
0.65,0.57,0.58
0.92,0.94,0.96];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Label',NameList);
BCC = BCC.draw();
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.85, 'EdgeColor',CList(i,:)./1.5, 'LineWidth',.8)
end
end
end
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.5, 'LineWidth',1)
end
% 添加刻度、修改字体
BCC.tickState('on')
BCC.setFont('FontName','Cambria', 'FontSize',17)
demo 8
dataMat = rand([11,4]);
dataMat = round(10.*dataMat.*((11:-1:1).'+1))./10;
colName = {'A','B','C','D'};
rowName = {'Acidobacteriota', 'Actinobacteriota', 'Proteobacteria', ...
'Chloroflexi', 'Bacteroidota', 'Firmicutes', 'Gemmatimonadota', ...
'Verrucomicrobiota', 'Patescibacteria', 'Planctomyetota', 'Others'};
figure('Units','normalized', 'Position',[.02,.05,.8,.85])
CC = chordChart(dataMat, 'colName',colName, 'Sep',1/80, 'SSqRatio',30/100);% -30/100
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.93,0.60,0.62
0.55,0.80,0.99
0.95,0.82,0.18
1.00,0.81,0.91];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.75,0.73,0.86
0.56,0.83,0.78
0.00,0.60,0.20
1.00,0.49,0.02
0.78,0.77,0.95
0.59,0.24,0.36
0.98,0.51,0.45
0.96,0.55,0.75
0.47,0.71,0.84
0.65,0.35,0.16
0.40,0.00,0.64];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
CListC = [0.55,0.83,0.76
0.75,0.73,0.86
0.00,0.60,0.19
1.00,0.51,0.04];
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListC(j,:), 'FaceAlpha',.4)
end
end
% 单独设置每一个弦末端方块(Set individual end blocks for each chord)
% Use obj.setEachSquareF_Prop
% or obj.setEachSquareT_Prop
% F means from (blocks below)
% T means to (blocks above)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setEachSquareT_Prop(i,j, 'FaceColor', CListF(i,:))
end
end
% 添加刻度
CC.tickState('on')
% 修改字体，字号及颜色
CC.setFont('FontName','Cambria', 'FontSize',17)
% 隐藏下方标签
textHdl = findobj(gca, 'Tag','ChordLabel');
for i = 1:length(textHdl)
if textHdl(i).Position(2) < 0
set(textHdl(i), 'Visible','off')
end
end
% 绘制图例(Draw legend)
scatterHdl = scatter(10.*ones(size(dataMat,1)),10.*ones(size(dataMat,1)), ...
55, 'filled');
for i = 1:length(scatterHdl)
scatterHdl(i).CData = CListF(i,:);
end
lgdHdl = legend(scatterHdl, rowName, 'Location','best', 'FontSize',16, 'FontName','Cambria', 'Box','off');
set(lgdHdl, 'Position',[.7482,.3577,.1658,.3254])
demo 9
dataMat = randi([0,10], [5,5]);
CList1 = [0.70,0.59,0.67
0.62,0.70,0.62
0.81,0.75,0.62
0.80,0.62,0.56
0.62,0.65,0.65];
CList2 = [0.02,0.02,0.02
0.59,0.26,0.33
0.38,0.49,0.38
0.03,0.05,0.03
0.29,0.28,0.32];
CList = CList2;
NameList={'CHORD','CHART','MADE','BY','SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/30, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
BCC.setChordMN(i,j, 'FaceAlpha',.5)
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',[0,0,0], 'LineWidth',5)
end
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontSize',17, 'FontWeight','bold')
BCC.tickLabelState('on')
BCC.setTickFont('FontSize',9)
demo 10
rng(2)
dataMat = rand([14,5]) > .3;
colName = {'phosphorylation', 'vasculature development', 'blood vessel development', ...
'cell adhesion', 'plasma membrane'};
rowName = {'THY1', 'FGF2', 'MAP2K1', 'CDH2', 'HBEGF', 'CXCR4', 'ECSCR',...
'ACVRL1', 'RECK', 'PNPLA6', 'CDH5', 'AMOT', 'EFNB2', 'CAV1'};
figure('Units','normalized', 'Position',[.02,.05,.9,.85])
CC = chordChart(dataMat, 'colName',colName, 'rowName',rowName, 'Sep',1/80, 'LRadius',1.2);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT1 = [0.5686 0.1961 0.2275
0.2275 0.2863 0.3765
0.8431 0.7882 0.4118
0.4275 0.4510 0.2706
0.3333 0.2706 0.2510];
CListT2 = [0.4941 0.5490 0.4118
0.9059 0.6510 0.3333
0.8980 0.6157 0.4980
0.8902 0.5137 0.4667
0.4275 0.2824 0.2784];
CListT3 = [0.4745 0.5843 0.7569
0.4824 0.5490 0.5843
0.6549 0.7216 0.6510
0.9412 0.9216 0.9059
0.9804 0.7608 0.6863];
CListT = CListT3;
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:), 'EdgeColor',[0,0,0])
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.9, 'EdgeColor',[0,0,0])
end
end
% 修改下方方块颜色(Modify the color of the blocks below)
logFC = sort(rand(1,14))*6 - 3;
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'CData',logFC(i), 'FaceColor','flat', 'EdgeColor',[0,0,0])
end
CMap = [ 0 0 1.0000; 0.0645 0.0645 1.0000; 0.1290 0.1290 1.0000; 0.1935 0.1935 1.0000
0.2581 0.2581 1.0000; 0.3226 0.3226 1.0000; 0.3871 0.3871 1.0000; 0.4516 0.4516 1.0000
0.5161 0.5161 1.0000; 0.5806 0.5806 1.0000; 0.6452 0.6452 1.0000; 0.7097 0.7097 1.0000
0.7742 0.7742 1.0000; 0.8387 0.8387 1.0000; 0.9032 0.9032 1.0000; 0.9677 0.9677 1.0000
1.0000 0.9677 0.9677; 1.0000 0.9032 0.9032; 1.0000 0.8387 0.8387; 1.0000 0.7742 0.7742
1.0000 0.7097 0.7097; 1.0000 0.6452 0.6452; 1.0000 0.5806 0.5806; 1.0000 0.5161 0.5161
1.0000 0.4516 0.4516; 1.0000 0.3871 0.3871; 1.0000 0.3226 0.3226; 1.0000 0.2581 0.2581
1.0000 0.1935 0.1935; 1.0000 0.1290 0.1290; 1.0000 0.0645 0.0645; 1.0000 0 0];
colormap(CMap);
try clim([-3,3]),catch,end
try caxis([-3,3]),catch,end
CBHdl = colorbar();
CBHdl.Position = [0.74,0.25,0.02,0.2];
% =========================================================================
% 交换XY轴(Swap XY axis)
patchHdl = findobj(gca, 'Type','patch');
for i = 1:length(patchHdl)
tX = patchHdl(i).XData;
tY = patchHdl(i).YData;
patchHdl(i).XData = tY;
patchHdl(i).YData = - tX;
end
txtHdl = findobj(gca, 'Type','text');
for i = 1:length(txtHdl)
txtHdl(i).Position([1,2]) = [1,-1].*txtHdl(i).Position([2,1]);
if txtHdl(i).Position(1) < 0
txtHdl(i).HorizontalAlignment = 'right';
else
txtHdl(i).HorizontalAlignment = 'left';
end
end
lineHdl = findobj(gca, 'Type','line');
for i = 1:length(lineHdl)
tX = lineHdl(i).XData;
tY = lineHdl(i).YData;
lineHdl(i).XData = tY;
lineHdl(i).YData = - tX;
end
% =========================================================================
txtHdl = findobj(gca, 'Type','text');
for i = 1:length(txtHdl)
if txtHdl(i).Position(1) > 0
txtHdl(i).Visible = 'off';
end
end
text(1.25,-.15, 'LogFC', 'FontSize',16)
text(1.25,1, 'Terms', 'FontSize',16)
patchHdl = [];
for i = 1:size(dataMat, 2)
patchHdl(i) = fill([10,11,12],[10,13,13], CListT(i,:), 'EdgeColor',[0,0,0]);
end
lgdHdl = legend(patchHdl, colName, 'Location','best', 'FontSize',14, 'FontName','Cambria', 'Box','off');
lgdHdl.Position = [.735,.53,.167,.27];
lgdHdl.ItemTokenSize = [18,8];
demo 11
rng(2)
dataMat = rand([12,12]);
dataMat(dataMat < .85) = 0;
dataMat(7,:) = 1.*(rand(1,12)+.1);
dataMat(11,:) = .6.*(rand(1,12)+.1);
dataMat(12,:) = [2.*(rand(1,10)+.1), 0, 0];
CList = [repmat([49,49,49],[10,1]); 235,28,34; 19,146,241]./255;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','off', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.78, 'EdgeColor',[0,0,0])
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',[0,0,0], 'LineWidth',2)
end
demo 12
dataMat = rand([9,9]);
dataMat(dataMat > .7) = 0;
dataMat(eye(9) == 1) = (rand([1,9])+.2).*3;
CList = [0.85,0.23,0.24
0.96,0.39,0.18
0.98,0.63,0.22
0.99,0.80,0.26
0.70,0.76,0.21
0.24,0.74,0.71
0.27,0.65,0.84
0.09,0.37,0.80
0.64,0.40,0.84];
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度、刻度标签
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7)
end
end
end
demo 13
rng(2)
dataMat = randi([1,40], [7,4]);
dataMat(rand([7,4]) < .1) = 0;
colName = compose('MATLAB%d', 1:4);
rowName = compose('SL%d', 1:7);
figure('Units','normalized', 'Position',[.02,.05,.7,.85])
CC = chordChart(dataMat, 'rowName',rowName, 'colName',colName, 'Sep',1/80, 'LRadius',1.32);
CC = CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT = [0.49,0.64,0.53
0.75,0.39,0.35
0.80,0.74,0.42
0.40,0.55,0.66];
for i = 1:size(dataMat, 2)
CC.setSquareT_N(i, 'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF = [0.91,0.91,0.97
0.62,0.95,0.66
0.91,0.61,0.20
0.54,0.45,0.82
0.99,0.76,0.81
0.91,0.85,0.83
0.53,0.42,0.43];
for i = 1:size(dataMat, 1)
CC.setSquareF_N(i, 'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
CC.setChordMN(i,j, 'FaceColor',CListT(j,:), 'FaceAlpha',.46)
end
end
CC.tickState('on')
CC.tickLabelState('on')
CC.setFont('FontSize',17, 'FontName','Cambria')
CC.setTickFont('FontSize',8, 'FontName','Cambria')
% 绘制图例(Draw legend)
scatterHdl = scatter(10.*ones(size(dataMat,1)),10.*ones(size(dataMat,1)), ...
55, 'filled');
for i = 1:length(scatterHdl)
scatterHdl(i).CData = CListF(i,:);
end
lgdHdl = legend(scatterHdl, rowName, 'Location','best', 'FontSize',16, 'FontName','Cambria', 'Box','off');
set(lgdHdl, 'Position',[.77,.38,.1658,.27])
demo 14
rng(6)
dataMat = randi([1,20], [8,8]);
dataMat(dataMat > 5) = 0;
dataMat(1,:) = randi([1,15], [1,8]);
dataMat(1,8) = 40;
dataMat(8,8) = 60;
dataMat = dataMat./sum(sum(dataMat));
CList = [0.33,0.53,0.86
0.94,0.50,0.42
0.92,0.58,0.30
0.59,0.47,0.45
0.37,0.76,0.82
0.82,0.68,0.29
0.75,0.62,0.87
0.43,0.69,0.57];
NameList={'CHORD', 'CHART', 'AND', 'BICHORD',...
'CHART', 'MADE', 'BY', 'SLANDARER'};
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList, 'Sep',1/12, 'Label',NameList, 'LRadius',1.33);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.7, 'EdgeColor',CList(i,:)./1.1)
end
end
end
% 修改方块颜色(Modify the color of the blocks)
for i = 1:size(dataMat, 1)
BCC.setSquareN(i, 'EdgeColor',CList(i,:)./1.7)
end
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17)
BCC.tickLabelState('on')
BCC.setTickFont('FontName','Cambria', 'FontSize',9)
% 调整数值字符串格式
% Adjust numeric string format
BCC.setTickLabelFormat(@(x)[num2str(round(x*100)),'%'])
demo 15
CList = [0.81,0.72,0.83
0.69,0.82,0.89
0.17,0.44,0.64
0.70,0.85,0.55
0.03,0.57,0.13
0.97,0.67,0.64
0.84,0.09,0.12
1.00,0.80,0.46
0.98,0.52,0.01
];
figure('Units','normalized', 'Position',[.02,.05,.53,.85], 'Color',[1,1,1])
% =========================================================================
ax1 = axes('Parent',gcf, 'Position',[0,1/2,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'a', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax2 = axes('Parent',gcf, 'Position',[1/2,1/2,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
dataMat = dataMat.*(1:9);
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'b', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax3 = axes('Parent',gcf, 'Position',[0,0,1/2,1/2]);
dataMat = rand([9,9]);
dataMat(dataMat > .4) = 0;
dataMat = dataMat.*(1:9).';
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
BCC.tickState('on')
BCC.setFont('Visible','off')
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceAlpha',.6)
end
end
end
text(-1.2,1.2, 'c', 'FontName','Times New Roman', 'FontSize',35)
% =========================================================================
ax4 = axes('Parent',gcf, 'Position',[1/2,0,1/2,1/2]);
ax4.XColor = 'none'; ax4.YColor = 'none';
ax4.XLim = [-1,1]; ax4.YLim = [-1,1];
hold on
NameList = {'Food supply', 'Biodiversity', 'Water quality regulation', ...
'Air quality regulation', 'Erosion control', 'Carbon storage', ...
'Water retention', 'Recreation', 'Soil quality regulation'};
patchHdl = [];
for i = 1:size(dataMat, 2)
patchHdl(i) = fill([10,11,12],[10,13,13], CList(i,:), 'EdgeColor',[0,0,0]);
end
lgdHdl = legend(patchHdl, NameList, 'Location','best', 'FontSize',14, 'FontName','Cambria', 'Box','off');
lgdHdl.Position = [.625,.11,.255,.27];
lgdHdl.ItemTokenSize = [18,8];
demo 16
dataMat = rand([15,15]);
dataMat(dataMat > .2) = 0;
CList = [ 75,146,241; 252,180, 65; 224, 64, 10; 5,100,146; 191,191,191;
26, 59,105; 255,227,130; 18,156,221; 202,107, 75; 0, 92,219;
243,210,136; 80, 99,129; 241,185,168; 224,131, 10; 120,147,190]./255;
CListC = [54,69,92]./255;
CList = CList.*.6 + CListC.*.4;
figure('Units','normalized', 'Position',[.02,.05,.6,.85])
BCC = biChordChart(dataMat, 'Arrow','on', 'CData',CList);
BCC = BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria', 'FontSize',17, 'Color',[0,0,0])
% 修改弦颜色(Modify chord color)
for i = 1:size(dataMat, 1)
for j = 1:size(dataMat, 2)
if dataMat(i,j) > 0
BCC.setChordMN(i,j, 'FaceColor',CListC ,'FaceAlpha',.07)
end
end
end
[~, N] = max(sum(dataMat > 0, 2));
for j = 1:size(dataMat, 2)
BCC.setChordMN(N,j, 'FaceColor',CList(N,:) ,'FaceAlpha',.6)
end
You need to download following tools:
- - Chord chart: [chord chart](https://www.mathworks.com/matlabcentral/fileexchange/116550-chord-chart)
- - Directed graph chord chart: [digraph chord chart]:(https://www.mathworks.com/matlabcentral/fileexchange/121043-digraph-chord-chart)
The line integral 
, where C is the boundary of the square 
oriented counterclockwise, can be evaluated in two ways:
, where C is the boundary of the square oriented counterclockwise, can be evaluated in two ways: Using the definition of the line integral:
% Initialize the integral sum
integral_sum = 0;
% Segment C1: x = -1, y goes from -1 to 1
y = linspace(-1, 1);
x = -1 * ones(size(y));
dy = diff(y);
integral_sum = integral_sum + sum(-x(1:end-1) .* dy);
% Segment C2: y = 1, x goes from -1 to 1
x = linspace(-1, 1);
y = ones(size(x));
dx = diff(x);
integral_sum = integral_sum + sum(y(1:end-1).^2 .* dx);
% Segment C3: x = 1, y goes from 1 to -1
y = linspace(1, -1);
x = ones(size(y));
dy = diff(y);
integral_sum = integral_sum + sum(-x(1:end-1) .* dy);
% Segment C4: y = -1, x goes from 1 to -1
x = linspace(1, -1);
y = -1 * ones(size(x));
dx = diff(x);
integral_sum = integral_sum + sum(y(1:end-1).^2 .* dx);
disp(['Direct Method Integral: ', num2str(integral_sum)]);
Plotting the square path
% Define the square's vertices
vertices = [-1 -1; -1 1; 1 1; 1 -1; -1 -1];
% Plot the square
figure;
plot(vertices(:,1), vertices(:,2), '-o');
title('Square Path for Line Integral');
xlabel('x');
ylabel('y');
grid on;
axis equal;
% Add arrows to indicate the path direction (counterclockwise)
hold on;
for i = 1:size(vertices,1)-1
% Calculate direction
dx = vertices(i+1,1) - vertices(i,1);
dy = vertices(i+1,2) - vertices(i,2);
% Reduce the length of the arrow for better visibility
scale = 0.2;
dx = scale * dx;
dy = scale * dy;
% Calculate the start point of the arrow
startx = vertices(i,1) + (1 - scale) * dx;
starty = vertices(i,2) + (1 - scale) * dy;
% Plot the arrow
quiver(startx, starty, dx, dy, 'MaxHeadSize', 0.5, 'Color', 'r', 'AutoScale', 'off');
end
hold off;
Apply Green's Theorem for the line integral
% Define the partial derivatives of P and Q
f = @(x, y) -1 - 2*y; % derivative of -x with respect to x is -1, and derivative of y^2 with respect to y is 2y
% Compute the double integral over the square [-1,1]x[-1,1]
integral_value = integral2(f, -1, 1, 1, -1);
disp(['Green''s Theorem Integral: ', num2str(integral_value)]);
Plotting the vector field related to Green’s theorem
% Define the grid for the vector field
[x, y] = meshgrid(linspace(-2, 2, 20), linspace(-2 ,2, 20));
% Define the vector field components
P = y.^2; % y^2 component
Q = -x; % -x component
% Plot the vector field
figure;
quiver(x, y, P, Q, 'b');
hold on; % Hold on to plot the square on the same figure
% Define the square's vertices
vertices = [-1 -1; -1 1; 1 1; 1 -1; -1 -1];
% Plot the square path
plot(vertices(:,1), vertices(:,2), '-o', 'Color', 'k'); % 'k' for black color
title('Vector Field (P = y^2, Q = -x) with Square Path');
xlabel('x');
ylabel('y');
axis equal;
% Add arrows to indicate the path direction (counterclockwise)
for i = 1:size(vertices,1)-1
% Calculate direction
dx = vertices(i+1,1) - vertices(i,1);
dy = vertices(i+1,2) - vertices(i,2);
% Reduce the length of the arrow for better visibility
scale = 0.2;
dx = scale * dx;
dy = scale * dy;
% Calculate the start point of the arrow
startx = vertices(i,1) + (1 - scale) * dx;
starty = vertices(i,2) + (1 - scale) * dy;
% Plot the arrow
quiver(startx, starty, dx, dy, 'MaxHeadSize', 0.5, 'Color', 'r', 'AutoScale', 'off');
end
hold off;
To solve a surface integral for example the
over the sphere 
easily in MATLAB, you can leverage the symbolic toolbox for a direct and clear solution. Here is a tip to simplify the process:
over the sphere easily in MATLAB, you can leverage the symbolic toolbox for a direct and clear solution. Here is a tip to simplify the process:- Use Symbolic Variables and Functions: Define your variables symbolically, including the parameters of your spherical coordinates θ and ϕ and the radius r . This allows MATLAB to handle the expressions symbolically, making it easier to manipulate and integrate them.
- Express in Spherical Coordinates Directly: Since you already know the sphere's equation and the relationship in spherical coordinates, define x, y, and z in terms of r , θ and ϕ directly.
- Perform Symbolic Integration: Use MATLAB's `int` function to integrate symbolically. Since the sphere and the function
are symmetric, you can exploit these symmetries to simplify the calculation.
Here’s how you can apply this tip in MATLAB code:
% Include the symbolic math toolbox
syms theta phi
% Define the limits for theta and phi
theta_limits = [0, pi];
phi_limits = [0, 2*pi];
% Define the integrand function symbolically
integrand = 16 * sin(theta)^3 * cos(phi)^2;
% Perform the symbolic integral for the surface integral
surface_integral = int(int(integrand, theta, theta_limits(1), theta_limits(2)), phi, phi_limits(1), phi_limits(2));
% Display the result of the surface integral symbolically
disp(['The surface integral of x^2 over the sphere is ', char(surface_integral)]);
% Number of points for plotting
num_points = 100;
% Define theta and phi for the sphere's surface
[theta_mesh, phi_mesh] = meshgrid(linspace(double(theta_limits(1)), double(theta_limits(2)), num_points), ...
linspace(double(phi_limits(1)), double(phi_limits(2)), num_points));
% Spherical to Cartesian conversion for plotting
r = 2; % radius of the sphere
x = r * sin(theta_mesh) .* cos(phi_mesh);
y = r * sin(theta_mesh) .* sin(phi_mesh);
z = r * cos(theta_mesh);
% Plot the sphere
figure;
surf(x, y, z, 'FaceColor', 'interp', 'EdgeColor', 'none');
colormap('jet'); % Color scheme
shading interp; % Smooth shading
camlight headlight; % Add headlight-type lighting
lighting gouraud; % Use Gouraud shading for smooth color transitions
title('Sphere: x^2 + y^2 + z^2 = 4');
xlabel('x-axis');
ylabel('y-axis');
zlabel('z-axis');
colorbar; % Add color bar to indicate height values
axis square; % Maintain aspect ratio to be square
view([-30, 20]); % Set a nice viewing angle
I am often talking to new MATLAB users. I have put together one script. If you know how this script works, why, and what each line means, you will be well on your way on your MATLAB learning journey.
% Clear existing variables and close figures
clear;
close all;
% Print to the Command Window
disp('Hello, welcome to MATLAB!');
% Create a simple vector and matrix
vector = [1, 2, 3, 4, 5];
matrix = [1, 2, 3; 4, 5, 6; 7, 8, 9];
% Display the created vector and matrix
disp('Created vector:');
disp(vector);
disp('Created matrix:');
disp(matrix);
% Perform element-wise multiplication
result = vector .* 2;
% Display the result of the operation
disp('Result of element-wise multiplication of the vector by 2:');
disp(result);
% Create plot
x = 0:0.1:2*pi; % Generate values from 0 to 2*pi
y = sin(x); % Calculate the sine of these values
% Plotting
figure; % Create a new figure window
plot(x, y); % Plot x vs. y
title('Simple Plot of sin(x)'); % Give the plot a title
xlabel('x'); % Label the x-axis
ylabel('sin(x)'); % Label the y-axis
grid on; % Turn on the grid
disp('This is the end of the script. Explore MATLAB further to learn more!');
Happy Pi Day!
3.14 π Day has arrived, and this post provides some very cool pi implementations and complete MATLAB code.
Firstly, in order to obtain the first n decimal places of pi, we need to write the following code (to prevent inaccuracies, we need to take a few more tails and perform another operation of taking the first n decimal places when needed):
function Pi=getPi(n)
if nargin<1,n=3;end
Pi=char(vpa(sym(pi),n+10));
Pi=abs(Pi)-48;
Pi=Pi(3:n+2);
end
With this function to obtain the decimal places of pi, our visualization journey has begun~Step by step, from simple to complex~(Please try to use newer versions of MATLAB to run, at least R17b)
1 Pie chart
Just calculate the proportion of each digit to the first 1500 decimal places:
% 获取pi前1500位小数
Pi=getPi(1500);
% 统计各个数字出现次数
numNum=find([diff(sort(Pi)),1]);
numNum=[numNum(1),diff(numNum)];
% 配色列表
CM=[20,164,199;43,187,170;53,165,81;189,190,28;248,167,22;
232,74,27;244,57,99;240,118,177;168,109,195;78,125,187]./255;
% 绘图并修饰
pieHdl=pie(numNum);
set(gcf,'Color',[1,1,1],'Position',[200,100,620,620]);
for i=1:2:20
pieHdl(i).EdgeColor=[1,1,1];
pieHdl(i).LineWidth=1;
pieHdl(i).FaceColor=CM((i+1)/2,:);
end
for i=2:2:20
pieHdl(i).Color=CM(i/2,:);
pieHdl(i).FontWeight='bold';
pieHdl(i).FontSize=14;
end
% 绘制图例并修饰
lgdHdl=legend(num2cell('0123456789'));
lgdHdl.FontWeight='bold';
lgdHdl.FontSize=11;
lgdHdl.TextColor=[.5,.5,.5];
lgdHdl.Location='southoutside';
lgdHdl.Box='off';
lgdHdl.NumColumns=10;
lgdHdl.ItemTokenSize=[20,15];
title("VISUALIZING \pi 'Pi' Chart | 1500 digits",'FontSize',18,...
'FontName','Times New Roman','Color',[.5,.5,.5])
2 line chart
Calculate the change in the proportion of each number:
% 获取pi前1500位小数
Pi=getPi(1500);
% 计算比例变化
Ratio=cumsum(Pi==(0:9)',2);
Ratio=Ratio./sum(Ratio);
D=1:length(Ratio);
% 配色列表
CM=[20,164,199;43,187,170;53,165,81;189,190,28;248,167,22;
232,74,27;244,57,99;240,118,177;168,109,195;78,125,187]./255;
hold on
% 循环绘图
for i=1:10
plot(D(20:end),Ratio(i,20:end),'Color',[CM(i,:),.6],'LineWidth',1.8)
end
% 坐标区域修饰
ax=gca;box on;grid on
ax.YLim=[0,.2];
ax.YTick=0:.05:.2;
ax.XTick=0:200:1400;
ax.YTickLabel={'0%','5%','10%','15%','20%'};
ax.XMinorTick='on';
ax.YMinorTick='on';
ax.LineWidth=.8;
ax.GridLineStyle='-.';
ax.FontName='Cambria';
ax.FontSize=11;
ax.XLabel.String='Decimals';
ax.YLabel.String='Proportion';
ax.XLabel.FontSize=13;
ax.YLabel.FontSize=13;
% 绘制图例并修饰
lgdHdl=legend(num2cell('0123456789'));
lgdHdl.NumColumns=5;
lgdHdl.FontWeight='bold';
lgdHdl.FontSize=11;
lgdHdl.TextColor=[.5,.5,.5];
3 stacked area diagram
% 获取pi前500位小数
Pi=getPi(500);
% 计算比例变化
Ratio=cumsum(Pi==(0:9)',2);
Ratio=Ratio./sum(Ratio);
% 配色列表
CM=[231,98,84;239,138,71;247,170,88;255,208,111;255,230,183;
170,220,224;114,188,213;82,143,173;55,103,149;30,70,110]./255;
% 绘制堆叠面积图
hold on
areaHdl=area(Ratio');
for i=1:10
areaHdl(i).FaceColor=CM(i,:);
areaHdl(i).FaceAlpha=.9;
end
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,720,420]);
ax=gca;
ax.YLim=[0,1];
ax.XMinorTick='on';
ax.YMinorTick='on';
ax.LineWidth=.8;
ax.FontName='Cambria';
ax.FontSize=11;
ax.TickDir='out';
ax.XLabel.String='Decimals';
ax.YLabel.String='Proportion';
ax.XLabel.FontSize=13;
ax.YLabel.FontSize=13;
ax.Title.String='Area Chart of Proportion — 500 digits';
ax.Title.FontSize=14;
% 绘制图例并修饰
lgdHdl=legend(num2cell('0123456789'));
lgdHdl.NumColumns=5;
lgdHdl.FontSize=11;
lgdHdl.Location='southeast';
4 connected stacked bar chart
% 获取pi前100位小数
Pi=getPi(100);
% 计算比例变化
Ratio=cumsum(Pi==(0:9)',2);
Ratio=Ratio./sum(Ratio);
X=Ratio(:,10:10:80)';
barHdl=bar(X,'stacked','BarWidth',.2);
CM=[231,98,84;239,138,71;247,170,88;255,208,111;255,230,183;
170,220,224;114,188,213;82,143,173;55,103,149;30,70,110]./255;
for i=1:10
barHdl(i).FaceColor=CM(i,:);
end
% 以下是生成连接的部分
hold on;axis tight
yEndPoints=reshape([barHdl.YEndPoints]',length(barHdl(1).YData),[])';
zeros(1,length(barHdl(1).YData));
yEndPoints=[zeros(1,length(barHdl(1).YData));yEndPoints];
barWidth=barHdl(1).BarWidth;
for i=1:length(barHdl)
for j=1:length(barHdl(1).YData)-1
y1=min(yEndPoints(i,j),yEndPoints(i+1,j));
y2=max(yEndPoints(i,j),yEndPoints(i+1,j));
if y1*y2<0
ty=yEndPoints(find(yEndPoints(i+1,j)*yEndPoints(1:i,j)>=0,1,'last'),j);
y1=min(ty,yEndPoints(i+1,j));
y2=max(ty,yEndPoints(i+1,j));
end
y3=min(yEndPoints(i,j+1),yEndPoints(i+1,j+1));
y4=max(yEndPoints(i,j+1),yEndPoints(i+1,j+1));
if y3*y4<0
ty=yEndPoints(find(yEndPoints(i+1,j+1)*yEndPoints(1:i,j+1)>=0,1,'last'),j+1);
y3=min(ty,yEndPoints(i+1,j+1));
y4=max(ty,yEndPoints(i+1,j+1));
end
fill([j+.5.*barWidth,j+1-.5.*barWidth,j+1-.5.*barWidth,j+.5.*barWidth],...
[y1,y3,y4,y2],barHdl(i).FaceColor,'FaceAlpha',.4,'EdgeColor','none');
end
end
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,720,420]);
ax=gca;box off
ax.YLim=[0,1];
ax.XMinorTick='on';
ax.YMinorTick='on';
ax.LineWidth=.8;
ax.FontName='Cambria';
ax.FontSize=11;
ax.TickDir='out';
ax.XTickLabel={'10','20','30','40','50','60','70','80'};
ax.XLabel.String='Decimals';
ax.YLabel.String='Proportion';
ax.XLabel.FontSize=13;
ax.YLabel.FontSize=13;
ax.Title.String='Area Chart of Proportion — 10-80 digits';
ax.Title.FontSize=14;
% 绘制图例并修饰
lgdHdl=legend(barHdl,num2cell('0123456789'));
lgdHdl.NumColumns=5;
lgdHdl.FontSize=11;
lgdHdl.Location='southeast';
5 bichord chart
Need to use this tool:
% 构建连接矩阵
dataMat=zeros(10,10);
Pi=getPi(1001);
for i=1:1000
dataMat(Pi(i)+1,Pi(i+1)+1)=dataMat(Pi(i)+1,Pi(i+1)+1)+1;
end
BCC=biChordChart(dataMat,'Arrow','on','Label',num2cell('0123456789'));
BCC=BCC.draw();
% 添加刻度
BCC.tickState('on')
% 修改字体，字号及颜色
BCC.setFont('FontName','Cambria','FontSize',17)
set(gcf,'Position',[200,100,820,820]);
6 Gravity simulation diagram
Imagine each decimal as a small ball with a mass of
For example, if
, the weight of ball 0 is 1, ball 9 is 1.2589, the initial velocity of the ball is 0, and it is attracted by other balls. Gravity follows the inverse square law, and if the balls are close enough, they will collide and their value will become 
, the weight of ball 0 is 1, ball 9 is 1.2589, the initial velocity of the ball is 0, and it is attracted by other balls. Gravity follows the inverse square law, and if the balls are close enough, they will collide and their value will become After adding, take the mod, add the velocity direction proportionally, and recalculate the weight.
Pi=[3,getPi(71)];K=.18;
% 基础配置
CM=[239,32,120;239,60,52;247,98,32;255,182,60;247,235,44;
142,199,57;55,180,70;0,170,239;40,56,146;147,37,139]./255;
T=linspace(0,2*pi,length(Pi)+1)';
T=T(1:end-1);
ct=linspace(0,2*pi,100);
cx=cos(ct).*.027;
cy=sin(ct).*.027;
% 初始数据
Pi=Pi(:);
N=Pi;
X=cos(T);Y=sin(T);
VX=T.*0;VY=T.*0;
PX=X;PY=Y;
% 未碰撞时初始质量
getM=@(x)(x+1).^K;
M=getM(N);
% 绘制初始圆圈
hold on
for i=1:length(N)
fill(cx+X(i),cy+Y(i),CM(N(i)+1,:),'EdgeColor','w','LineWidth',1)
end
for k=1:800
% 计算加速度
Rn2=1./squareform(pdist([X,Y])).^2;
Rn2(eye(length(X))==1)=0;
MRn2=Rn2.*(M');
AX=X'-X;AY=Y'-Y;
normXY=sqrt(AX.^2+AY.^2);
AX=AX./normXY;AX(eye(length(X))==1)=0;
AY=AY./normXY;AY(eye(length(X))==1)=0;
AX=sum(AX.*MRn2,2)./150000;
AY=sum(AY.*MRn2,2)./150000;
% 计算速度及新位置
VX=VX+AX;X=X+VX;PX=[PX,X];
VY=VY+AY;Y=Y+VY;PY=[PY,Y];
% 检测是否有碰撞
R=squareform(pdist([X,Y]));
R(triu(ones(length(X)))==1)=inf;
[row,col]=find(R<=0.04);
if length(X)==1
break;
end
if ~isempty(row)
% 碰撞的点合为一体
XC=(X(row)+X(col))./2;YC=(Y(row)+Y(col))./2;
VXC=(VX(row).*M(row)+VX(col).*M(col))./(M(row)+M(col));
VYC=(VY(row).*M(row)+VY(col).*M(col))./(M(row)+M(col));
PC=nan(length(row),size(PX,2));
NC=mod(N(row)+N(col),10);
% 删除碰撞点并绘图
uniNum=unique([row;col]);
X(uniNum)=[];VX(uniNum)=[];
Y(uniNum)=[];VY(uniNum)=[];
for i=1:length(uniNum)
plot(PX(uniNum(i),:),PY(uniNum(i),:),'LineWidth',2,'Color',CM(N(uniNum(i))+1,:))
end
PX(uniNum,:)=[];PY(uniNum,:)=[];N(uniNum,:)=[];
% 绘制圆形
for i=1:length(XC)
fill(cx+XC(i),cy+YC(i),CM(NC(i)+1,:),'EdgeColor','w','LineWidth',1)
end
% 补充合体点
X=[X;XC];Y=[Y;YC];VX=[VX;VXC];VY=[VY;VYC];
PX=[PX;PC];PY=[PY;PC];N=[N;NC];M=getM(N);
end
end
for i=1:size(PX,1)
plot(PX(i,:),PY(i,:),'LineWidth',2,'Color',CM(N(i)+1,:))
end
text(-1,1,{['Num=',num2str(length(Pi))];['K=',num2str(K)]},'FontSize',13,'FontName','Cambria')
% 图窗及坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.Position=[0,0,1,1];
ax.DataAspectRatio=[1,1,1];
ax.XLim=[-1.1,1.1];
ax.YLim=[-1.1,1.1];
ax.XTick=[];
ax.YTick=[];
ax.XColor='none';
ax.YColor='none';
7 forest chart
The method comes from
The digits of π are shown as a forest. Each tree in the forest represents the digits of π up to the next 9. The first 10 trees are "grown" from the digit sets 314159, 2653589, 79, 3238462643383279, 50288419, 7169, 39, 9, 3751058209, and 749.
BRANCHES
The first digit of a tree controls how many branches grow from the trunk of the tree. For example, the first tree's first digit is 3, so you see 3 branches growing from the trunk.
The next digit's branches grow from the end of a branch of the previous digit in left-to-right order. This process continues until all the tree's digits have been used up.
Each tree grows from a set of consecutive digits sampled from the digits of π up to the next 9. The first tree, shown here, grows from 314159. Each of the digits determine how many branches grow at each fork in the tree — the branches here are colored by their corresponding digit to illustrate this. Leaves encode the digits in a left-to-right order. The digit 9 spawns a flower on one of the branches of the previous digit. The branching exception is 0, which terminates the current branch — 0 branches grow!
LEAVES AND FLOWERS
The tree's digits themselves are drawn as circular leaves, color-coded by the digit.
The leaf exception is 9, which causes one of the branches of the previous digit to sprout a flower! The petals of the flower are colored by the digit before the 9 and the center is colored by the digit after the 9, which is on the next tree. This is how the forest propagates.
The colors of a flower are determined by the first digit of the next tree and the penultimate digit of the current tree. If the current tree only has one digit, then that digit is used. Leaves are placed at the tips of branches in a left-to-right order — you can "easily" read them off. Additionally, the leaves are distributed within the tree (without disturbing their left-to-right order) to spread them out as much as possible and avoid overlap. This order is deterministic.
The leaf placement exception are the branch set that sprouted the flower. These are not used to grow leaves — the flower needs space!
function PiTree(X,pos,D)
lw=2;
theta=pi/2+(rand(1)-.5).*pi./12;
% 树叶及花朵颜色
CM=[237,32,121;237,62,54;247,99,33;255,183,59;245,236,43;
141,196,63;57,178,74;0,171,238;40,56,145;146,39,139]./255;
hold on
if all(X(1:end-2)==0)
endSet=[pos,pos,theta];
else
kplot(pos(1)+[0,cos(theta)],pos(2)+[0,sin(theta)],lw./.6)
endSet=[pos,pos+[cos(theta),sin(theta)],theta];
% 计算层级
Layer=0;
for i=1:length(X)
Layer=[Layer,ones(1,X(i)).*i];
end
% 计算树枝
if D
for i=1:length(X)-2
if X(i)==0 % 若数值为0则不长树枝
newSet=endSet(1,:);
elseif X(i)==1 % 若数值为1则一长一短两个树枝
tTheta=endSet(1,5);
tTheta=linspace(tTheta+pi/8,tTheta-pi/8,2)'+(rand([2,1])-.5).*pi./8;
newSet=repmat(endSet(1,3:4),[X(i),1]);
newSet=[newSet.*[1;1],newSet+[cos(tTheta),sin(tTheta)].*.7^Layer(i).*[1;.1],tTheta];
else % 其他情况数值为几长几个树枝
tTheta=endSet(1,5);
tTheta=linspace(tTheta+pi/5,tTheta-pi/5,X(i))'+(rand([X(i),1])-.5).*pi./8;
newSet=repmat(endSet(1,3:4),[X(i),1]);
newSet=[newSet,newSet+[cos(tTheta),sin(tTheta)].*.7^Layer(i),tTheta];
end
% 绘制树枝
for j=1:size(newSet,1)
kplot(newSet(j,[1,3]),newSet(j,[2,4]),lw.*.6^Layer(i))
end
endSet=[endSet;newSet];
endSet(1,:)=[];
end
end
end
% 计算叶子和花朵位置
FLSet=endSet(:,3:4);
[~,FLInd]=sort(FLSet(:,1));
FLSet=FLSet(FLInd,:);
[~,tempInd]=sort(rand([1,size(FLSet,1)]));
tempInd=sort(tempInd(1:length(X)-2));
flowerInd=tempInd(randi([1,length(X)-2],[1,1]));
leafInd=tempInd(tempInd~=flowerInd);
% 绘制树叶
for i=1:length(leafInd)
scatter(FLSet(leafInd(i),1),FLSet(leafInd(i),2),70,'filled','CData',CM(X(i)+1,:))
end
% 绘制花朵
for i=1:5
% if ~D
% tC=CM(X(end)+1,:);
% else
% tC=CM(X(end-2)+1,:);
% end
scatter(FLSet(flowerInd,1)+cos(pi*2*i/5).*.18,FLSet(flowerInd,2)+sin(pi*2*i/5).*.18,60,...
'filled','CData',CM(X(end-2)+1,:),'MarkerEdgeColor',[1,1,1])
end
scatter(FLSet(flowerInd,1),FLSet(flowerInd,2),60,'filled','CData',CM(X(end)+1,:),'MarkerEdgeColor',[1,1,1])
drawnow;%axis tight
% =========================================================================
function kplot(XX,YY,LW,varargin)
LW=linspace(LW,LW*.6,10);%+rand(1,20).*LW./10;
XX=linspace(XX(1),XX(2),11)';
XX=[XX(1:end-1),XX(2:end)];
YY=linspace(YY(1),YY(2),11)';
YY=[YY(1:end-1),YY(2:end)];
for ii=1:10
plot(XX(ii,:),YY(ii,:),'LineWidth',LW(ii),'Color',[.1,.1,.1])
end
end
end
main part:
Pi=[3,getPi(800)];
pos9=[0,find(Pi==9)];
set(gcf,'Position',[200,50,900,900],'Color',[1,1,1]);
ax=gca;hold on
ax.Position=[0,0,1,1];
ax.DataAspectRatio=[1,1,1];
ax.XLim=[.5,36];
ax.XTick=[];
ax.YTick=[];
ax.XColor='none';
ax.YColor='none';
for j=1:8
for i=1:11
n=i+(j-1)*11;
if n<=85
tPi=Pi((pos9(n)+1):pos9(n+1)+1);
if length(tPi)>2
PiTree(tPi,[0+i*3,0-j*4],true);
else
PiTree([Pi(pos9(n)),tPi],[0+i*3,0-j*4],false);
end
end
end
end
8 random walk
n=1200;
% 获取pi前n位小数
Pi=getPi(n);
CM=[239,65,75;230,115,48;229,158,57;232,136,85;239,199,97;
144,180,116;78,166,136;81,140,136;90,118,142;43,121,159]./255;
hold on
endPoint=[0,0];
t=linspace(0,2*pi,100);
T=linspace(0,2*pi,11)+pi/2;
fill(endPoint(1)+cos(t).*.5,endPoint(2)+sin(t).*.5,CM(Pi(1)+1,:),'EdgeColor','none')
for i=1:n
theta=T(Pi(i)+1);
plot(endPoint(1)+[0,cos(theta)],endPoint(2)+[0,sin(theta)],'Color',[CM(Pi(i)+1,:),.8],'LineWidth',1.2);
endPoint=endPoint+[cos(theta),sin(theta)];
end
fill(endPoint(1)+cos(t).*.5,endPoint(2)+sin(t).*.5,CM(Pi(n)+1,:),'EdgeColor','none')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
ax.XLim=[-30,5];
ax.YLim=[-5,40];
% 绘制图例
endPoint=[1,35];
for i=1:10
theta=T(i);
plot(endPoint(1)+[0,cos(theta).*2],endPoint(2)+[0,sin(theta).*2],'Color',[CM(i,:),.8],'LineWidth',3);
text(endPoint(1)+cos(theta).*2.7,endPoint(2)+sin(theta).*2.7,num2str(i-1),'Color',[1,1,1].*.7,...
'FontSize',12,'FontWeight','bold','FontName','Cambria','HorizontalAlignment','center')
end
text(-15,35,'Random walk of \pi digits','Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','center','FontSize',25,'FontAngle','italic')
9 grid chart
Pi=[3,getPi(399)];
% 配色数据
CM=[248,65,69;246,152,36;249,198,81;67,170,139;87,118,146]./255;
% 绘制圆圈
hold on
t=linspace(0,2*pi,100);
x=cos(t).*.8.*.5;
y=sin(t).*.8.*.5;
for i=1:400
[col,row]=ind2sub([20,20],i);
if mod(Pi(i),2)==0
fill(x+col,y+row,CM(round((Pi(i)+1)/2),:),'LineWidth',1,'EdgeAlpha',.8)
else
fill(x+col,y+row,[0,0,0],'EdgeColor',CM(round((Pi(i)+1)/2),:),'LineWidth',1,'EdgeAlpha',.7)
end
end
text(10.5,-.4,'\pi on a grid — 400 digits','Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','center','FontSize',25,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.YDir='reverse';
ax.XLim=[.5,20.5];
ax.YLim=[-1,20.5];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
10 scale grid diagram
Let's still put the numbers in the form of circles, but the difference is that six numbers are grouped together, and the pure purple circle at the end is the six 9s that we are familiar with decimal places 762-767
Pi=[3,getPi(767)];
% 762-767
% 配色数据
CM=[239,32,120;239,60,52;247,98,32;255,182,60;247,235,44;
142,199,57;55,180,70;0,170,239;40,56,146;147,37,139]./255;
% 绘制圆圈
hold on
t=linspace(0,2*pi,100);
x=cos(t).*.9.*.5;
y=sin(t).*.9.*.5;
for i=1:6:length(Pi)
n=round((i-1)/6+1);
[col,row]=ind2sub([10,13],n);
tNum=Pi(i:i+5);
numNum=find([diff(sort(tNum)),1]);
numNum=[numNum(1),diff(numNum)];
cumNum=cumsum(numNum);
uniNum=unique(tNum);
for j=length(cumNum):-1:1
fill(x./6.*cumNum(j)+col,y./6.*cumNum(j)+row,CM(uniNum(j)+1,:),'EdgeColor','none')
end
end
% 绘制图例
for i=1:10
fill(x./4+5.5+(i-5.5)*.32,y./4+14.5,CM(i,:),'EdgeColor','none')
text(5.5+(i-5.5)*.32,14.9,num2str(i-1),'Color',[1,1,1],'FontSize',...
9,'FontName','Cambria','HorizontalAlignment','center')
end
text(5.5,-.2,'FEYNMAN POINT of \pi','Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','center','FontSize',25,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,600,820]);
ax=gca;
ax.YDir='reverse';
ax.Position=[0,0,1,1];
ax.XLim=[.3,10.7];
ax.YLim=[-1,15.5];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
11 text chart
First, write a code to generate an image of each letter:
function getLogo
if ~exist('image','dir')
mkdir('image\')
end
logoSet=['.',char(65:90)];
for i=1:27
figure();
ax=gca;
ax.XLim=[-1,1];
ax.YLim=[-1,1];
ax.XColor='none';
ax.YColor='none';
ax.DataAspectRatio=[1,1,1];
logo=logoSet(i);
hold on
text(0,0,logo,'HorizontalAlignment','center','FontSize',320,'FontName','Segoe UI Black')
exportgraphics(ax,['image\',logo,'.png'])
close
end
dotPic=imread('image\..png');
newDotPic=uint8(ones([400,size(dotPic,2),3]).*255);
newDotPic(end-size(dotPic,1)+1:end,:,1)=dotPic(:,:,1);
newDotPic(end-size(dotPic,1)+1:end,:,2)=dotPic(:,:,2);
newDotPic(end-size(dotPic,1)+1:end,:,3)=dotPic(:,:,3);
imwrite(newDotPic,'image\..png')
S=20;
for i=1:27
logo=logoSet(i);
tPic=imread(['image\',logo,'.png']);
sz=size(tPic,[1,2]);
sz=round(sz./sz(1).*400);
tPic=imresize(tPic,sz);
tBox=uint8(255.*ones(size(tPic,[1,2])+S));
tBox(S+1:S+size(tPic,1),S+1:S+size(tPic,2))=tPic(:,:,1);
imwrite(cat(3,tBox,tBox,tBox),['image\',logo,'.png'])
end
end
Pi=[3,-1,getPi(150)];
CM=[109,110,113;224,25,33;244,126,26;253,207,2;154,203,57;111,150,124;
121,192,235;6,109,183;190,168,209;151,118,181;233,93,163]./255;
ST={'.','ZERO','ONE','TWO','THREE','FOUR','FIVE','SIX','SEVEN','EIGHT','NINE'};
n=1;
hold on
% 循环绘制字母
for i=1:20%:10
STList='';
NMList=[];
PicListR=uint8(zeros(400,0));
PicListG=uint8(zeros(400,0));
PicListB=uint8(zeros(400,0));
% PicListA=uint8(zeros(400,0));
for j=1:6
STList=[STList,ST{Pi(n)+2}];
NMList=[NMList,ones(size(ST{Pi(n)+2})).*(Pi(n)+2)];
n=n+1;
if length(STList)>15&&length(STList)+length(ST{Pi(n)+2})>20
break;
end
end
for k=1:length(STList)
tPic=imread(['image\',STList(k),'.png']);
% PicListA=[PicListA,tPic(:,:,1)];
PicListR=[PicListR,(255-tPic(:,:,1)).*CM(NMList(k),1)];
PicListG=[PicListG,(255-tPic(:,:,2)).*CM(NMList(k),2)];
PicListB=[PicListB,(255-tPic(:,:,3)).*CM(NMList(k),3)];
end
PicList=cat(3,PicListR,PicListG,PicListB);
image([-1200,1200],[0,150]-(i-1)*150,flipud(PicList))
end
% 图窗及坐标区域修饰
set(gcf,'Position',[200,100,600,820]);
ax=gca;
ax.DataAspectRatio=[1,1,1];
ax.XLim=[-1300,1300];
ax.Position=[0,0,1,1];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.YLim=[-19*150-80,230];
12 spiral chart
Pi=getPi(600);
% 配色列表
CM=[78,121,167;242,142,43;225,87,89;118,183,178;89,161,79;
237,201,72;176,122,161;255,157,167;156,117,95;186,176,172]./255;
% 绘制圆圈
hold on
t=linspace(0,2*pi,100);
x=cos(t).*.8;
y=sin(t).*.8;
for i=1:600
X=i.*cos(i./10)./10;
Y=i.*sin(i./10)./10;
fill(X+x,Y+y,CM(Pi(i)+1,:),'EdgeColor','none','FaceAlpha',.9)
end
text(0,65,'The Circle of \pi','Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','center','FontSize',25,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.XLim=[-60,60];
ax.YLim=[-60,70];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
13 Archimedean spiral diagram
a=1;b=.227;
Pi=getPi(500);
% 配色列表
CM=[78,121,167;242,142,43;225,87,89;118,183,178;89,161,79;
237,201,72;176,122,161;255,157,167;156,117,95;186,176,172]./255;
% 绘制圆圈
hold on
T=0;R=1;
t=linspace(0,2*pi,100);
x=cos(t).*.7;
y=sin(t).*.7;
for i=1:500
X=R.*cos(T);Y=R.*sin(T);
fill(X+x,Y+y,CM(Pi(i)+1,:),'EdgeColor','none','FaceAlpha',.9)
T=T+1./R.*1.4;
R=a+b*T;
end
text(17.25,22,{'The Archimedes spiral of \pi';'—— 500 digits'},...
'Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','right','FontSize',25,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.XLim=[-19,18.5];
ax.YLim=[-20,25];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
14 proportional Archimedean spiral diagram
Pi=[3,getPi(1199)];
% 配色数据
CM=[239,32,120;239,60,52;247,98,32;255,182,60;247,235,44;
142,199,57;55,180,70;0,170,239;40,56,146;147,37,139]./255;
% CM=slanCM(184,10);
% 绘制圆圈
hold on
T=0;R=1;
t=linspace(0,2*pi,100);
x=cos(t).*.7;
y=sin(t).*.7;
for i=1:4:length(Pi)
X=R.*cos(T);Y=R.*sin(T);
tNum=Pi(i:i+3);
numNum=find([diff(sort(tNum)),1]);
numNum=[numNum(1),diff(numNum)];
cumNum=cumsum(numNum);
uniNum=unique(tNum);
for j=length(cumNum):-1:1
fill(x./4.*cumNum(j)+X,y./4.*cumNum(j)+Y,CM(uniNum(j)+1,:),'EdgeColor','none')
end
T=T+1./R.*1.4;
R=a+b*T;
end
text(14,16.5,{'The ratio of four numbers from \pi';'—— 1200 digits'},...
'Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','right','FontSize',23,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.XLim=[-15,15.5];
ax.YLim=[-15,19];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
15 graph
% 构建连接矩阵
corrMat=zeros(10,10);
Pi=getPi(401);
for i=1:400
corrMat(Pi(i)+1,Pi(i+1)+1)=corrMat(Pi(i)+1,Pi(i+1)+1)+1;
end
% 配色列表
colorList=[0.3725 0.2745 0.5647
0.1137 0.4118 0.5882
0.2196 0.6510 0.6471
0.0588 0.5216 0.3294
0.4510 0.6863 0.2824
0.9294 0.6784 0.0314
0.8824 0.4863 0.0196
0.8000 0.3137 0.2431
0.5804 0.2039 0.4314
0.4353 0.2510 0.4392];
t=linspace(0,2*pi,11);t=t(1:10)';
posXY=[cos(t),sin(t)];
maxWidth=max(corrMat(corrMat>0));
minWidth=min(corrMat(corrMat>0));
ttList=linspace(0,1,3)';
% 循环绘图
hold on
for i=1:size(corrMat,1)
for j=i+1:size(corrMat,2)
if corrMat(i,j)>0
tW=(corrMat(i,j)-minWidth)./(maxWidth-minWidth);
colorData=(1-ttList).*colorList(i,:)+ttList.*colorList(j,:);
CData(:,:,1)=colorData(:,1);
CData(:,:,2)=colorData(:,2);
CData(:,:,3)=colorData(:,3);
% 绘制连线
fill(linspace(posXY(i,1),posXY(j,1),3),...
linspace(posXY(i,2),posXY(j,2),3),[0,0,0],'LineWidth',tW.*12+1,...
'CData',CData,'EdgeColor','interp','EdgeAlpha',.7,'FaceAlpha',.7)
end
end
% 绘制圆点
scatter(posXY(i,1),posXY(i,2),200,'filled','LineWidth',1.2,...
'MarkerFaceColor',colorList(i,:),'MarkerEdgeColor',[.7,.7,.7]);
text(posXY(i,1).*1.13,posXY(i,2).*1.13,num2str(i-1),'Color',[1,1,1].*.7,...
'FontSize',30,'FontWeight','bold','FontName','Cambria','HorizontalAlignment','center')
end
text(0,1.3,'Numerical adjacency of \pi — 400 digits','Color',[1,1,1],'FontName','Cambria',...
'HorizontalAlignment','center','FontSize',25,'FontAngle','italic')
% 图窗和坐标区域修饰
set(gcf,'Position',[200,100,820,820]);
ax=gca;
ax.XLim=[-1.2,1.2];
ax.YLim=[-1.21,1.5];
ax.XTick=[];
ax.YTick=[];
ax.Color=[0,0,0];
ax.DataAspectRatio=[1,1,1];
16 circos chart
Need to use this tool:
Class=getPi(1001)+1;
Data=diag(ones(1,1000),-1);
className={'0','1','2','3','4','5','6','7','8','9'};
colorOrder=[239,65,75;230,115,48;229,158,57;232,136,85;239,199,97;
144,180,116;78,166,136;81,140,136;90,118,142;43,121,159]./255;
CC=circosChart(Data,Class,'ClassName',className,'ColorOrder',colorOrder);
CC=CC.draw();
ax=gca;
ax.Color=[0,0,0];
CC.setClassLabel('Color',[1,1,1],'FontSize',25,'FontName','Cambria')
CC.setLine('LineWidth',.7)
YOU CAN GET ALL CODE HERE:
Chord diagrams are very common in Python and R, but there are no related functions in MATLAB before. It is not easy to draw chord diagrams of the same quality as R language, But I created a MATLAB tool that could almost do it.
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↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑ ↑
Here is the help document:
1 Data Format
The data requirement is a numerical matrix with all values greater than or equal to 0, or a table array, or a numerical matrix and cell array for names. First, give an example of a numerical matrix:
1.1 Numerical Matrix
dataMat=randi([0,5],[5,4]);
% 绘图(draw)
CC=chordChart(dataMat);
CC=CC.draw();
Since each object is not named, it will be automatically named Rn and Cn
1.2 Numerical Matrix and Cell Array for Names
dataMat=[2 0 1 2 5 1 2;
3 5 1 4 2 0 1;
4 0 5 5 2 4 3];
colName={'G1','G2','G3','G4','G5','G6','G7'};
rowName={'S1','S2','S3'};
CC=chordChart(dataMat,'rowName',rowName,'colName',colName);
CC=CC.draw();
RowName should be the same size as the rows of the matrix
ColName should be the same size as the columns of the matrix
For this example, if the value in the second row and third column is 1, it indicates that there is an energy flow from S2 to G3, and a chord with a width of 1 is needed between these two.
1.3 Table Array
A table array in the following format is required:
2 Decorate Chord
2.1 Batch modification of chords
Batch modification of chords can be done using the setChordProp function, and all properties of the Patch object can be modified. For example, modifying the color of the string, edge color, edge line sstyle, etc.:
CC.setChordProp('EdgeColor',[.3,.3,.3],'LineStyle','--',...
'LineWidth',.1,'FaceColor',[.3,.3,.3])
2.2 Individual Modification of Chord
The individual modification of chord can be done using the setChordMN function, where the values of m and n correspond exactly to the rows and columns of the original numerical matrix. For example, changing the color of the strings flowing from S2 to G4 to red:
CC.setChordMN(2,4,'FaceColor',[1,0,0])
2.3 Color Mapping of Chords
Just use function colormap to do so:
% version 1.7.0更新
% 可使用colormap函数直接修改颜色
% Colors can be adjusted directly using the function colormap(demo4)
colormap(flipud(pink))
3 Arc Shaped Block Decoration
3.1 Batch Decoration of Arc-Shaped Blocks
use:
- setSquareT_Prop
- setSquareF_Prop
to modify the upper and lower blocks separately, and all attributes of the Patch object can be modified. For example, batch modify the upper blocks (change to black):
CC.setSquareT_Prop('FaceColor',[0,0,0])
3.2 Arc-Shaped Blocks Individually Decoration
use:
- setSquareT_N
- setSquareF_N
to modify the upper and lower blocks separately. For example, modify the second block above separately (changed to red):
CC.setSquareT_N(2,'FaceColor',[.8,0,0])
4 Font Adjustment
Use the setFont function to adjust the font, and all properties of the text object can be modified. For example, changing the font size, font, and color of the text:
CC.setFont('FontSize',25,'FontName','Cambria','Color',[0,0,.8])
5 Show and Hide Ticks
Usage:
CC.tickState('on')
% CC.tickState('off')
6 Attribute 'Sep' with Adjustable Square Spacing
If the matrix size is large, the drawing will be out of scale:
dataMat=randi([0,1],[20,10]);
CC=chordChart(dataMat);
CC=CC.draw();
% CC.tickState('on')
We can modify its Sep attribute:
dataMat=randi([0,1],[20,10]);
% use Sep to decrease space (separation)
% 使用 sep 减小空隙
CC=chordChart(dataMat,'Sep',1/120);
CC=CC.draw();
7 Modify Text Direction
dataMat=randi([0,1],[20,10]);
% use Sep to decrease space (separation)
% 使用 sep 减小空隙
CC=chordChart(dataMat,'Sep',1/120);
CC=CC.draw();
CC.tickState('on')
% version 1.7.0更新
% 函数labelRatato用来旋转标签
% The function labelRatato is used to rotate the label
CC.labelRotate('on')
8 Add Tick Labels
dataMat=[2 0 1 2 5 1 2;
3 5 1 4 2 0 1;
4 0 5 5 2 4 3];
colName={'G1','G2','G3','G4','G5','G6','G7'};
rowName={'S1','S2','S3'};
CC=chordChart(dataMat,'rowName',rowName,'colName',colName);
CC=CC.draw();
CC.setFont('FontSize',17,'FontName','Cambria')
% 显示刻度和数值
% Displays scales and numeric values
CC.tickState('on')
CC.tickLabelState('on')
% 调节标签半径
% Adjustable Label radius
CC.setLabelRadius(1.3);
% figure()
% dataMat=[2 0 1 2 5 1 2;
% 3 5 1 4 2 0 1;
% 4 0 5 5 2 4 3];
% dataMat=dataMat+rand(3,7);
% dataMat(dataMat<1)=0;
%
% CC=chordChart(dataMat,'rowName',rowName,'colName',colName);
% CC=CC.draw();
% CC.setFont('FontSize',17,'FontName','Cambria')
%
% % 显示刻度和数值
% % Displays scales and numeric values
% CC.tickState('on')
% CC.tickLabelState('on')
%
% % 调节标签半径
% % Adjustable Label radius
% CC.setLabelRadius(1.4);
9 Custom Tick Label Format
A function handle is required to input numeric output strings. The format can be set through the setTickLabelFormat function, such as Scientific notation:
dataMat=[2 0 1 2 5 1 2;
3 5 1 4 2 0 1;
4 0 5 5 2 4 3];
dataMat=dataMat+rand(3,7);
dataMat(dataMat<1)=0;
dataMat=dataMat.*1000;
CC=chordChart(dataMat);
CC=CC.draw();
CC.setFont('FontSize',17,'FontName','Cambria')
% 显示刻度和数值
% Displays scales and numeric values
CC.tickState('on')
CC.tickLabelState('on')
% 调节标签半径
% Adjustable Label radius
CC.setLabelRadius(1.4);
% 调整数值字符串格式
% Adjust numeric string format
CC.setTickLabelFormat(@(x)sprintf('%0.1e',x))
10 A Demo
rng(2)
dataMat=randi([1,7],[11,5]);
colName={'Fly','Beetle','Leaf','Soil','Waxberry'};
rowName={'Bartomella','Bradyrhizobium','Dysgomonas','Enterococcus',...
'Lactococcus','norank','others','Pseudomonas','uncultured',...
'Vibrionimonas','Wolbachia'};
CC=chordChart(dataMat,'rowName',rowName,'colName',colName,'Sep',1/80);
CC=CC.draw();
% 修改上方方块颜色(Modify the color of the blocks above)
CListT=[0.7765 0.8118 0.5216;0.4431 0.4706 0.3843;0.5804 0.2275 0.4549;
0.4471 0.4039 0.6745;0.0157 0 0 ];
for i=1:5
CC.setSquareT_N(i,'FaceColor',CListT(i,:))
end
% 修改下方方块颜色(Modify the color of the blocks below)
CListF=[0.5843 0.6863 0.7843;0.1098 0.1647 0.3255;0.0902 0.1608 0.5373;
0.6314 0.7961 0.2118;0.0392 0.2078 0.1059;0.0157 0 0 ;
0.8549 0.9294 0.8745;0.3882 0.3255 0.4078;0.5020 0.7216 0.3843;
0.0902 0.1843 0.1804;0.8196 0.2314 0.0706];
for i=1:11
CC.setSquareF_N(i,'FaceColor',CListF(i,:))
end
% 修改弦颜色(Modify chord color)
for i=1:5
for j=1:11
CC.setChordMN(j,i,'FaceColor',CListT(i,:),'FaceAlpha',.5)
end
end
CC.tickState('on')
CC.labelRotate('on')
CC.setFont('FontSize',17,'FontName','Cambria')
Hope to have your Reviews and Stars!!!
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