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Protein Array Tool

version 2.0.0.0 (2.99 MB) by Danny Allen
Converts an image of an R&D Systems Proteome Profiler Array into a list of relative protein levels.

6 Downloads

Updated 24 Oct 2019

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This tool extracts the relative protein levels from an image of an R&D Systems Proteome Profiler Antibody Array.
The tool automatically finds each of the spots in the image and identifies which protein they correspond to.
A template of spot locations is initially fitted using a rigid transformation based on two automatically identified reference spots. Individual spot positions are then optimised using a local search.

The relative protein levels are displayed on screen and saved to a csv file.

Cite As

Danny Allen (2019). Protein Array Tool (https://www.mathworks.com/matlabcentral/fileexchange/35128-protein-array-tool), MATLAB Central File Exchange. Retrieved .

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Updates

2.0.0.0

New options added to improve robustness and utility.

1.0.0.0

Fixed bug which stopped it working on latest versions of matlab.

MATLAB Release Compatibility
Created with R2019a
Compatible with R2018b to any release
Platform Compatibility
Windows macOS Linux
Acknowledgements

Inspired by: 2D minimal bounding box