Skeleton Length and Aspect Ratio Calculator for Mitochondria

This function is used to generate skeletons of mitochondria, and calculate the length of the said skeletons.
12 Downloads
Updated 17 Nov 2021

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Before using this function in matlab, you would need to obtian the mito_meta file from vast and python, and the h5 file of all mitochondira. The methods of obtaining which are posted in the Project Website(after the website is made).
This function use the mito_meta and the h5 to generate skeletons of mitochondria, and calculate the length of the said skeletons. This function also generate 3 aspect ratios for each mitochondria.
The final product of this function would be 1 csv files, containing 5 columns: gray value, xy aspect ratio, yz aspect ratio, xz aspect ratio, and skeleton length.
To use this function in matlab, also install findND https://www.mathworks.com/matlabcentral/fileexchange/64383-findnd?s_tid=srchtitle and skeleton3D https://www.mathworks.com/matlabcentral/fileexchange/43400-skeleton3d as matlab apps.

Cite As

Xueying Wang (2024). Skeleton Length and Aspect Ratio Calculator for Mitochondria (https://www.mathworks.com/matlabcentral/fileexchange/101579-skeleton-length-and-aspect-ratio-calculator-for-mitochondria), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2021b
Compatible with any release
Platform Compatibility
Windows macOS Linux
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Acknowledgements

Inspired by: Skeleton3D

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Version Published Release Notes
1.0.1

This code is primarily developed by YuTian (Tim) Fan, who interned with me in Fall 2021.

1.0.0