Skeleton Length and Aspect Ratio Calculator for Mitochondria

Version 1.0.1 (3,33 KB) von Xueying Wang
This function is used to generate skeletons of mitochondria, and calculate the length of the said skeletons.
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Aktualisiert 17. Nov 2021

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Before using this function in matlab, you would need to obtian the mito_meta file from vast and python, and the h5 file of all mitochondira. The methods of obtaining which are posted in the Project Website(after the website is made).
This function use the mito_meta and the h5 to generate skeletons of mitochondria, and calculate the length of the said skeletons. This function also generate 3 aspect ratios for each mitochondria.
The final product of this function would be 1 csv files, containing 5 columns: gray value, xy aspect ratio, yz aspect ratio, xz aspect ratio, and skeleton length.
To use this function in matlab, also install findND https://www.mathworks.com/matlabcentral/fileexchange/64383-findnd?s_tid=srchtitle and skeleton3D https://www.mathworks.com/matlabcentral/fileexchange/43400-skeleton3d as matlab apps.

Zitieren als

Xueying Wang (2025). Skeleton Length and Aspect Ratio Calculator for Mitochondria (https://www.mathworks.com/matlabcentral/fileexchange/101579-skeleton-length-and-aspect-ratio-calculator-for-mitochondria), MATLAB Central File Exchange. Abgerufen.

Kompatibilität der MATLAB-Version
Erstellt mit R2021b
Kompatibel mit allen Versionen
Plattform-Kompatibilität
Windows macOS Linux
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Inspiriert von: Skeleton3D

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Version Veröffentlicht Versionshinweise
1.0.1

This code is primarily developed by YuTian (Tim) Fan, who interned with me in Fall 2021.
1.0.0