Python script not running with system

I am trying to call a python fuunctiion from system. However, I am getting an error and the source seems to be the python functon itself (see below). However, when I run this function directly from a shell, it works well.

[status,cmdout]=system('python /Users/guynir/OligoMiner/outputClean.py -h')

status =

1

cmdout =

'Traceback (most recent call last):

File "/Users/guynir/OligoMiner/outputClean.py", line 43, in <module>

from Bio.SeqUtils import MeltingTemp as mt

ImportError: No module named Bio.SeqUtils

'

Answer 1

[Abhishek Gupta]

Hi,

Referring to the following resources, which might help you to execute python scripts from MATLAB: -

https://www.mathworks.com/help/matlab/matlab_external/call-user-defined-custom-module.html

https://www.mathworks.com/help/matlab/call-python-libraries.html