Bioinformatics GO Ontology, leave-one-out cross validation

3 Ansichten (letzte 30 Tage)
Chet Seligman
Chet Seligman am 15 Apr. 2011
I need to do gene enrichment analysis using GO ontology followed by Leave-one-out cross validation. Can anyone point me to example code for this purpose?
Chet

Antworten (1)

Richard Willey
Richard Willey am 15 Apr. 2011
Here's a simple example that shows how to do leave one out cross validation using the cvpartition and crossval commands in Statistics Toolbox
% Load the Fisher Iris set, because every examples MUST
% include the Fisher Iris set
load fisheriris;
y = species;
% Uses cvpartition to create an object
c = cvpartition(y,'leaveout');
% Create an anonymous function to peform calssification
fun = @(xT,yT,xt,yt)(sum(~strcmp(yt,classify(xt,xT,yT))))
% Apply cross validation
rate = sum(crossval(fun,meas,y,'partition',c))/sum(c.TestSize)

Kategorien

Mehr zu Bioinformatics Toolbox finden Sie in Help Center und File Exchange

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by