Breast cancer histologic image cell segmentation

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Alessio Serrani
Alessio Serrani am 23 Feb. 2018
Bearbeitet: KALYAN ACHARJYA am 4 Mär. 2020
Hi everybody! I'm trying to detect both tumoral cells and linfocytes (darker and smaller points) in a dataset of images like the ones attached. I know that tumoral cells have a less omogeneous coloring and are bigger with respect to linfo. I need to segment these two structeres to obtain a mask that will be used for classification in the next step. I already tried a watershed algorithm and various combinations of thesholdings and morfological operations with a very bad final result (the algorithm doesn't detect a sufficient number of cells or detects agglomerations of them). I attach three images as an example of our data set. Thanks for all the replies!
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PS: these are some of our results (red=cancer, green=linfo)
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  4 Kommentare
Eleanor Betton
Eleanor Betton am 27 Feb. 2020
Do you have an example of your code? Have you tried do any colour transformations to amplify the contast. Is detecting the cells or identifying between the tumoral cells and linfocytes which is the problem?
KALYAN ACHARJYA
KALYAN ACHARJYA am 4 Mär. 2020
Bearbeitet: KALYAN ACHARJYA am 4 Mär. 2020
Steps:
  1. Do the Preprocessing (Contrast Enhancement)
  2. Segmentation (Not so challenging as per attached images)
  3. Compare the results with Ground Truth Images

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