How to re-orient T1W image with template?

I am working on a large data set of T1W images and expecting to do Voxel Based Morphometry. It seems that most of the images require manual re-orientation compared with TPM prior/template and its time consuming. (one by one) I am seeking any automatic imaging tool/software or matalab programe which can be used to do it as batch (whole images together with respect to template).