Error while reading DICOM images in simple program

I am newbie to MATLAB, I was trying simple example given here. Code:
% Preallocate the 256-by-256-by-1-by-20 image array.
X = repmat(int16(0), [256 256 1 20]);
% Read the series of images.
for p=1:20
filename = sprintf('brain_%03d.dcm', p);
X(:,:,1,p) = dicomread(filename);
end
% Display the image stack.
montage(X,[]);
I am getting error as :
Error using montage>validateColormapSyntax (line 339)
An indexed image can be uint8, uint16, double, single, or logical.
Error in montage>parse_inputs (line 259)
cmap = validateColormapSyntax(I,varargin{2});
Error in montage (line 114)
[I,cmap,mSize,indices,displayRange,parent] = parse_inputs(varargin{:});
Error in main (line 11)
montage(X,[]);
What I am doing wrong here? When I comment montage(), it runs without any error. Thanks for you time.

 Akzeptierte Antwort

Walter Roberson
Walter Roberson am 20 Dez. 2015
If the data signed 16 bit like you seem to indicate, then you will need to use
X = zeros(256, 256, 1, 20);
If the data is unsigned 16 bit then you can use
X = zeros(256, 256, 1, 20, 'uint16');

6 Kommentare

I tried both lines by adding after repmat(), I am not getting results as expected. By using
X = zeros(256, 256, 1, 20);
I get
And using
X = zeros(256, 256, 1, 20, 'uint16');
I get black image. Thanks @Walter Roberson
I am getting :
Warning: Image is too big to fit on screen; displaying at 50%
In imshow (line 309)
In montage (line 152)
In main (line 17)
Is this the cause of getting such result?
You should use the 'Size' option of montage()
montage(X, 'Size', [4 5])
Could you tell me what min(X(:)) and max(X(:)) are?
Nitinkumar Ambekar
Nitinkumar Ambekar am 20 Dez. 2015
Bearbeitet: Nitinkumar Ambekar am 20 Dez. 2015
I tried 'size', getting same output
min(X(:)) is 0
max(X(:)) is 1059
Thanks Walter Roberson, I changed the following and it works now!
$montage(X,[]); %Old which doesnt work
montage(X,'displayrange',[]);
With that maximum you could use uint16()

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