Read DICOM files and create a Montage
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Praz Sam
am 9 Okt. 2015
Kommentiert: Ryan Harris
am 19 Mär. 2018
Hi all, I'm quiet new to MatLab and started doing some DICOM Image processing tasks for my project. I am following this Mathworks article to make a montage as a simple exercise. But it gives me an error though I follow the same code segments.
The simple code is
% Preallocate the 256-by-256-by-1-by-20 image array.
X = repmat(int16(0), [256 256 1 20]);
% Read the series of images.
for p=1:20
filename = sprintf('DICOM/brain_%03d.dcm', p);
X(:,:,1,p) = dicomread(filename);
end
% Display the image stack.
montage(X,[])
It gives me the error,
>> ReadDicomFiles
Error using montage>validateColormapSyntax (line 334)
An indexed image can be uint8, uint16, double, single, or logical.
Error in montage>parse_inputs (line 254)
cmap = validateColormapSyntax(I,varargin{2});
Error in montage (line 114)
[I,cmap,mSize,indices,displayRange,parent] = parse_inputs(varargin{:});
Error in ReadDicomFiles (line 9)
montage(X,[])
I'm using the same dataset they provided. What will be the reason?
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Stalin Samuel
am 9 Okt. 2015
s = dicomread('IM-0001-0001.dcm');%read one image to find the size
[r c] = size(s);
X = repmat(double(0), [r c 1 9]);
for p=1:9
filename = sprintf('IM-0001-000%d.dcm', p);
X(:,:,1,p) =double(dicomread(filename));
end
% Display the image stack.
montage(X,[])
3 Kommentare
Daniel Bridges
am 22 Jun. 2016
Bearbeitet: Daniel Bridges
am 22 Jun. 2016
I had the same error Praz did, using my own DICOM files, and I think it was from the data being int16 instead of uint16: Wrapping dicomread(filename) in the uint16 or double function gets montage to work.
It seems I should use uint16 rather than double to keep the data as 16-bit rather than convert it to 64-bit unnecessarily.
Ryan Harris
am 19 Mär. 2018
So i'm getting an error for the very last line montage(x,[]). Why do you think this is?
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