Encoding Binary to DNA sequencing

6 Ansichten (letzte 30 Tage)
Meghashree G
Meghashree G am 25 Sep. 2015
Kommentiert: Walter Roberson am 7 Feb. 2021
I am trying to convert the string into binary and sequencing with DNA,but i am getting error as follows :
Attempted to access bases(145); index out of bounds because numel(bases)=4.
Error in ==> filename at 21
result((k+1)/2) = bases(index);
What is the solution for this? Here is the code:
clc;
ui=input('enter the message:','s')
decString = unicode2native(ui,'utf-8')
hexString = dec2hex(decString)
binaryArray= dec2bin(decString,8)
bases = 'ATGC';
for k = 1 : 2 : length(binaryArray)
% Convert these two digits into a number 1 - 4.
index = 2 * binaryArray(k) + binaryArray(k+1) + 1;
% Use that index to assign a letter to our result.
result((k+1)/2) = bases(index);
end
% Display in command window:
result
Thank you
  2 Kommentare
Shiva Reddy
Shiva Reddy am 7 Feb. 2021
It is giving error like index exceeds (4)
Walter Roberson
Walter Roberson am 7 Feb. 2021
Yes, that is exactly the problem that was discussed in the Answer.

Melden Sie sich an, um zu kommentieren.

Akzeptierte Antwort

Image Analyst
Image Analyst am 25 Sep. 2015
bases has only 4 elements so index must stay in the range 1,2,3,4 not 145 like you have it. Think about the logic some more.
  5 Kommentare
Meghashree G
Meghashree G am 26 Sep. 2015
Bearbeitet: Walter Roberson am 26 Sep. 2015
The solution i got was
TGAC
TCAG
TCGT
TCAA
TCTA
TGCC
Its a vector right?
i want it to be something like this
TGAC
TCAG
TCGT
TCAA
TCTA
TGCC
i have to this sequence to other side.
Walter Roberson
Walter Roberson am 26 Sep. 2015
I do not see the difference between what you got and what you want.
To answer your question, though: No, it is not a vector, it is an array. Character strings in MATLAB are arrays, not individual entities. The "result" variable above is char of size 6 x 4
If you want it as a cell array of strings, then use cellstr(result)

Melden Sie sich an, um zu kommentieren.

Weitere Antworten (0)

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

Translated by