Plot Food Web

version 1.4.0.3 (19.8 KB) by Francisco de Castro

Functions for ecological modelling

https://github.com/capahaddock/Ecology

0.0

(0)

697 Downloads

Updated 6 Dec 2019

From GitHub

View Version History

View License on GitHub

PLOTFOODWEB makes it easy to produce beautiful 3D or 2D figures of ecological food webs. The only required argument is the adjacency matrix of predator-prey connections. Sizes, colors, trophic levels, and the spatial arrangement can be specified as optional arguments. The submission figure shows three possibilities. In the top-left is the default type. The top-right is high-quality with random arrangement and the size of spheres as a function of the Log of body mass. At the bottom, a biplot where species are arranged according to mass (X-axis) and trophic level (Y-axis).

Cite As

Francisco de Castro (2022). Plot Food Web (https://github.com/capahaddock/Ecology), GitHub. Retrieved December 5, 2022.

MATLAB Release Compatibility

Created with R2008b

Compatible with any release

Platform Compatibility

Windows macOS Linux

Tags Add Tags

Acknowledgements

Inspired by: Patchline

Community Treasure Hunt

Find the treasures in MATLAB Central and discover how the community can help you!

Start Hunting!

To view or report issues in this GitHub add-on, visit the GitHub Repository.

	6 Dec 2019	1.4.0.3	Connect to Github
Download	6 Dec 2019	1.4.0.2	Corrected detail in the help.
Download	3 Dec 2019	1.4.0.1	new figure
Download	3 Dec 2019	1.4.0.0	Add a new type of plot. Reorganize help
Download	29 Jun 2018	1.3.0.0	Use default color map if Brewer color function is not installed. Forgot to include the file in previous update Change 'mds' option in 'arrange' for 'pca' (principal components analysis). Added option to color by kmeans clustering of adjacency matrix. Correct brewer colormap problem Correct minor typos in help Added required function 'calcarc'
Download	6 Apr 2016	1.2.0.0	Ability to specify variable line colors. Possibility to use curved lines Ability to provide a full interactions matrix, not just adjacency matrix of 0 and 1.
Download	11 Nov 2015	1.1.0.0	Option to plot in 2D Option to arrange species by multidimensional scaling Faster plotting Optional transparency of lines Option to plot the food web in 2D. Option to arrange species in 3D with mutidimensional scaling Faster plotting of cylinders connecting species Optional transparency of lines Rearranged and improved help Added missing function fwrotation
Download	3 Aug 2011	1.0.0.0