dimensions of opened NetCDF files
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Christoph
am 22 Okt. 2012
Beantwortet: Odontungalag Dorjsuren
am 28 Apr. 2015
Hi,
I frequently use NetCDF files to load data in Matlab:
ncload mydata.nc; for a quick open of new files
nc_varget(); to get specific variables
Now, I changed to a new workplace and found here the handling with
ncid = netcdf.open('myfile.nc','nowrite');
varid = netcdf.reqvarid(ncid,'variable');
data = netcdf.getVar(ncid,varid);
This works, but the dimension is changed: While ncload loads the variable correctly as e.g. 12 x 40 x 180 x 90 (as described in the NetCDF file, ncdump),
with netcdf.getVar I get a variable of size 90 x 180 x 40 x12, which is quite inconvenient. Is this a usual behavior of netcdf.xxx or is there something I didn't recognize?
I appreciate any information, Christoph
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John
am 23 Okt. 2012
When you shell out to run ncdump, you are running a C executable that is linked into the netcdf library. Since it is written in C, it used row-major order, so "time_counter" becomes the first dimension listed as it varies the slowest.
MATLAB is column-major order, so "time_counter" gets listed last, since that's where the slowest-varying dimension would be.
So, no, no mistake, it's just fallout from row-major-order vs. column-major-ordering. Also, since you are using NC_VARGET, check the snctools README, there's a discussion of the issue there.
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John
am 22 Okt. 2012
Hi Christoph,
The "ncload" function referred to is part of the "netcdf toolbox", which is a very old and unsupported piece of software. It transposes the data when it reads and writes, whereas the native netcdf.getVar and putVar functions do not transpose, thus preserving the ordering of the data.
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