- Which MATLAB release are you using?
- Does the example from the documentation sbmlobj = sbmlimport('oscillator.xml'); work?
- Can you post an example which causes the error here?
Error in sbmlimport - Conversion from SBML/XML to stochiometric matrix
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I am using sbmlimport function to convert KEGG pathway SBML (KGML) file into stochiometric matrix. It has .xml extension, but getting this error -- Error using SimBiology.SBMLReadWrite/sbmlread. A fatal error occurred reading in this file. Error in privatesbmlio (line 26). Error in sbmlimport (line 62) ret = privatesbmlio('read',nargout,{fullfilename, varargin});
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Ingrid Tigges
am 25 Jun. 2015
Hi Namrata,
The files from KEGG are not in the SBML format but in the KGML format (see KGML specification information ). SimBiology cannot read in KGML files. There are however tools available on the internet, for example this tool which allow the conversion of KGML files into the SBML format.
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