Difference between position of elements of GUI before and after open it in GUIDE

Hi

I'm designing a GUI with GUIDE. When I open a window in GUIDE and after that run it, position of elements like panels,radio buttons and etc are difference with when I run MATLAB and directly run a GUI from .m file. It is a confusing problem because the real positions are that I'm running from .m file.

All elements of window are nearly 1cm righter than running it directly and I have a little vertical difference between these two. I should design a window and after that close MATLAB and run it directly too see the real positions!. If i directly open it from .m file after using GUIDE, there isn't any difference with running from GUIDE and run from .m file. I should only reopen MATLAB to see the difference.

What is your idea about this problem ? How can I solve it?

thanks.