Vectorize operations referencing adjacent elements of a matrix

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I have made the simple code:
for i=2:xsize-1
for j=2:ysize-1
for n=2:zsize-1
matrix(i,j,n)=matrix(i,j,n)+0.2*(matrix(i,j,n)*6-matrix(i-1,j,n)-matrix(i+1,j,n)-matrix(i,j-1,n)-matrix(i,j+1,n)-matrix(i,j,n-1)-matrix(i,j,n+1));
end
end
end
This is part of a diffusion problem and it is particularly slow because the 3D matrix is large. Is it possible to vectorize an operation like this? How do you vectorize references to the matrix like this?

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Andrei Bobrov
Andrei Bobrov am 18 Feb. 2014
Bearbeitet: Andrei Bobrov am 18 Feb. 2014
out = convn(matrix,cat(3,[0 0 0;0 -1 0;0 0 0],...
[0 -1 0;-1 1 -1;0 -1 0],...
[0 0 0;0 -1 0;0 0 0]),'valid');
  1 Kommentar
Christopher
Christopher am 19 Feb. 2014
Bearbeitet: Christopher am 19 Feb. 2014
Thanks! This gives about a factor of 20 speedup. The form I used is
newmatrix = convn(matrix,cat(3,[0 0 0; 0 rt 0; 0 0 0],...
[0 rt 0; rt 1-rt*6 rt; 0 rt 0],...
[0 0 0; 0 rt 0; 0 0 0]),'same');
where rt=0.2

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