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eLocs
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This package provides functions for localizing EEG electrode locations using 3D scanners or motion capture system. Two 3D scans are provided as samples.
The code was tested for MATLAB R2018a+ and requires Statistics and Neural Network Toolbox.
Tested Scanners are Occipital Structure scanner Mark I, and EinScan Shining Pro+.
Tested motion capture was OptiTrack with a digitizing probe.
For further information see: https://doi.org/10.3389/fnins.2019.01159
Cite As
Shirazi, Seyed Yahya, and Helen J. Huang. “More Reliable EEG Electrode Digitizing Methods Can Reduce Source Estimation Uncertainty, but Current Methods Already Accurately Identify Brodmann Areas.” Frontiers in Neuroscience, vol. 13, Frontiers Media SA, Nov. 2019, doi:10.3389/fnins.2019.01159.
Select Citation Style
MLA |
Shirazi, Seyed Yahya, and Helen J. Huang. “More Reliable EEG Electrode Digitizing Methods Can Reduce Source Estimation Uncertainty, but Current Methods Already Accurately Identify Brodmann Areas.” Frontiers in Neuroscience, vol. 13, Frontiers Media SA, Nov. 2019, doi:10.3389/fnins.2019.01159.
|
APA |
Shirazi, S. Y., & Huang, H. J. (2019). More Reliable EEG Electrode Digitizing Methods Can Reduce Source Estimation Uncertainty, but Current Methods Already Accurately Identify Brodmann Areas. Frontiers in Neuroscience, 13. Frontiers Media SA. Retrieved from https://doi.org/10.3389%2Ffnins.2019.01159
|
BibTeX |
@article{Shirazi_2019,
doi = {10.3389/fnins.2019.01159},
url = {https://doi.org/10.3389%2Ffnins.2019.01159},
year = 2019,
month = {nov},
publisher = {Frontiers Media {SA}},
volume = {13},
author = {Seyed Yahya Shirazi and Helen J. Huang},
title = {More Reliable {EEG} Electrode Digitizing Methods Can Reduce Source Estimation Uncertainty, but Current Methods Already Accurately Identify Brodmann Areas},
journal = {Frontiers in Neuroscience}
}
|
MATLAB Release Compatibility
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- Sciences > Neuroscience > Human Brain Mapping > EEG/MEG/ECoG >
- Engineering > Biomedical Engineering > Biomedical Signal Processing >
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code
- convertMocapPts2EeglabFormat
- createLine3d
- importMocapTakeElocs
- projPointOnLine3d
- sortFaceMarkers
- transformPoint3d
- updateOrigin
- writeElocsEeglab_r2
dependencies/fieldtrip-20180201
- ft_defaults
- ft_definetrial
- ft_electrodeplacement
- ft_electroderealign
- ft_interactiverealign
- ft_layoutplot
- ft_meshrealign
- ft_prepare_layout
- ft_prepare_mesh
- ft_prepare_montage
- ft_preprocessing
- ft_sourceinterpolate
- ft_timelockanalysis
- ft_volumedownsample
- ft_volumereslice
- ft_volumesegment
dependencies/fieldtrip-20180201/@config
dependencies/fieldtrip-20180201/@config/private
dependencies/fieldtrip-20180201/contrib/spike
dependencies/fieldtrip-20180201/external/fileexchange
dependencies/fieldtrip-20180201/external/signal
dependencies/fieldtrip-20180201/external/signal/private
dependencies/fieldtrip-20180201/external/stats
dependencies/fieldtrip-20180201/fileio
- ft_chantype
- ft_chanunit
- ft_filetype
- ft_read_data
- ft_read_header
- ft_read_headshape
- ft_read_mri
- ft_read_sens
- ft_read_spike
- ft_read_vol
- ft_write_data
- ft_write_mri
dependencies/fieldtrip-20180201/fileio/private
- ama2vol
- avw_hdr_read
- avw_img_read
- bti2grad
- buffer_wait_dat
- channelposition
- cornerpoints
- ctf2grad
- dataset2files
- db_insert
- db_insert_blob
- db_open
- db_select
- db_select_blob
- decode_fif
- decode_nifti1
- decode_res4
- defaultId
- dimlength
- encode_nifti1
- fetch_url
- fif2grad
- fiff_open_le
- filetype_check_extension
- filetype_check_header
- filetype_check_uri
- fixdimord
- fixinside
- fixname
- fixoldorg
- fixpos
- fixsampleinfo
- ft_apply_montage
- ft_checkdata
- ft_convert_units
- ft_datatype
- ft_datatype_comp
- ft_datatype_dip
- ft_datatype_freq
- ft_datatype_headmodel
- ft_datatype_mvar
- ft_datatype_raw
- ft_datatype_sens
- ft_datatype_source
- ft_datatype_spike
- ft_datatype_timelock
- ft_determine_units
- ft_estimate_units
- ft_fetch_data
- ft_fetch_header
- ft_findcfg
- ft_getopt
- ft_hastoolbox
- ft_headcoordinates
- ft_notification
- ft_platform_supports
- ft_progress
- ft_scalingfactor
- ft_senslabel
- ft_senstype
- ft_voltype
- ft_warning
- ft_warp_apply
- getdatfield
- getdimord
- getdimsiz
- getsubfield
- hasyokogawa
- homer2opto
- inflate_file
- inifile
- in_fopen_manscan
- in_fread_manscan
- issubfield
- istrue
- itab2grad
- jaga16_packet
- labelcmb2indx
- littleendian
- loadama
- loadvar
- match_str
- mne2grad
- mxDeserialize
- mxSerialize
- ndgrid
- netmeg2grad
- neuralynx_crc
- neuralynx_getheader
- neuralynx_timestamp
- np_readdata
- np_readfileinfo
- np_read_splitted_fileinfo
- openbdf
- pos2dim
- pos2transform
- readbdf.m
- ReadHeader
- read_4d_hdr
- read_ah5_data
- read_ahdf5_hdr
- read_asa
- read_asa_bnd
- read_asa_elc
- read_asa_mri
- read_asa_vol
- read_besa_avr
- read_besa_besa
- read_besa_sfp
- read_besa_swf
- read_bioimage_mgrid
- read_biosemi_bdf
- read_biosig_data
- read_biosig_header
- read_brainvision_eeg
- read_brainvision_pos
- read_brainvision_vhdr
- read_bti_m4d
- read_bucn_nirsdata
- read_bucn_nirshdr
- read_buffer_offline_data
- read_buffer_offline_header
- read_ced_son
- read_combined_ds
- read_ctf_ascii
- read_ctf_hdm
- read_ctf_meg4
- read_ctf_mri
- read_ctf_mri4
- read_ctf_res4
- read_ctf_shm
- read_ctf_svl
- read_deymed_dat
- read_deymed_ini
- read_edf
- read_eeglabdata
- read_eeglabheader
- read_egis_data
- read_egis_header
- read_erplabdata
- read_erplabheader
- read_eyelink_asc
- read_itab_mhd
- read_mclust_t
- read_mff_bin
- read_micromed_trc
- read_mpi_dap
- read_mpi_ds
- read_nervus_data
- read_nervus_header
- read_neuralynx_bin
- read_neuralynx_cds
- read_neuralynx_dma
- read_neuralynx_ds
- read_neuralynx_ncs
- read_neuralynx_nse
- read_neuralynx_nst
- read_neuralynx_nts
- read_neuralynx_ntt
- read_neuralynx_sdma
- read_neuralynx_ttl
- read_neuromag_headpos
- read_neuromag_maxfilterlog
- read_neuroshare
- read_neurosim_evolution
- read_neurosim_signals
- read_neurosim_spikes
- read_nexstim_nxe
- read_nex_data
- read_nex_header
- read_nihonkohden_hdr
- read_nihonkohden_m00
- read_nimh_cortex
- read_nmc_archive_k_data
- read_nmc_archive_k_hdr
- read_ns_avg
- read_ns_eeg
- read_ns_hdr
- read_plexon_ddt
- read_plexon_ds
- read_plexon_nex
- read_plexon_plx
- read_ply
- read_polhemus_fil
- read_sbin_data
- read_sbin_header
- read_shm_data
- read_shm_header
- read_smi_txt
- read_spike6mat_data
- read_spike6mat_header
- read_spmeeg_data
- read_spmeeg_header
- read_tmsi_poly5
- read_tobii_tsv
- read_videomeg_aud
- read_videomeg_vid
- read_wdq_data
- read_wdq_header
- read_wobj
- read_yokogawa_data
- read_yokogawa_data_new
- read_yokogawa_header
- read_yokogawa_header_new
- read_zebris
- refine
- rotate
- setsubfield
- time2offset
- timestamp_neuralynx
- timestamp_plexon
- tokenize
- translate
- undobalancing
- volumewrite_spm
- write_brainvision_eeg
- write_ctf_shm
- write_edf
- write_gdf
- write_neuralynx_ncs
- write_plexon_nex
- xml2struct
- yokogawa2grad
- yokogawa2grad_new
dependencies/fieldtrip-20180201/forward
- ft_apply_montage
- ft_average_sens
- ft_convert_units
- ft_determine_units
- ft_estimate_units
- ft_headmodel_interpolate
- ft_prepare_vol_sens
- ft_senslabel
- ft_senstype
- ft_transform_headshape
- ft_transform_sens
- ft_voltype
dependencies/fieldtrip-20180201/forward/private
- bounding_mesh
- channelposition
- cornerpoints
- defaultId
- elproj
- find_innermost_boundary
- find_outermost_boundary
- fitsphere
- fixoldorg
- fixpos
- ft_datatype_headmodel
- ft_datatype_sens
- ft_getopt
- ft_hastoolbox
- ft_headcoordinates
- ft_notification
- ft_platform_supports
- ft_scalingfactor
- ft_warning
- ft_warp_apply
- hasyokogawa
- issubfield
- istrue
- leadsphere_all
- legs
- lmoutr
- lmoutrn
- match_str
- meg_ini
- mesh2edge
- normals
- pinvNx2
- plinprojn
- project_elec
- ptriprojn
- solid_angle
- transfer_elec
- undobalancing
dependencies/fieldtrip-20180201/plotting
- ft_plot_axes
- ft_plot_crosshair
- ft_plot_dipole
- ft_plot_headshape
- ft_plot_lay
- ft_plot_mesh
- ft_plot_ortho
- ft_plot_sens
- ft_plot_slice
- ft_plot_vol
- ft_select_box
- ft_select_point
- ft_select_point3d
- ft_uilayout
dependencies/fieldtrip-20180201/plotting/private
- bg_rgba2rgb
- channelposition
- coordsys2label
- cornerpoints
- cylinder
- defaultId
- elproj
- find_mesh_edge
- find_triangle_neighbours
- fixoldorg
- fixpos
- ft_apply_montage
- ft_convert_units
- ft_datatype_sens
- ft_determine_units
- ft_estimate_units
- ft_getopt
- ft_notification
- ft_platform_supports
- ft_progress
- ft_scalingfactor
- ft_senslabel
- ft_senstype
- ft_voltype
- ft_warning
- ft_warp_apply
- headsurface
- icosahedron
- icosahedron162
- icosahedron2562
- icosahedron42
- icosahedron642
- intersect_plane
- issubfield
- istrue
- lmoutrn
- ltrisect
- match_str
- mesh2edge
- ndgrid
- pinvNx2
- projecttri
- ptriprojn
- ptriside
- refine
- rotate
- scale
- select3d
- translate
- undobalancing
dependencies/fieldtrip-20180201/preproc
- ft_preproc_bandpassfilter
- ft_preproc_bandstopfilter
- ft_preproc_baselinecorrect
- ft_preproc_denoise
- ft_preproc_derivative
- ft_preproc_detrend
- ft_preproc_dftfilter
- ft_preproc_highpassfilter
- ft_preproc_hilbert
- ft_preproc_lowpassfilter
- ft_preproc_medianfilter
- ft_preproc_padding
- ft_preproc_polyremoval
- ft_preproc_rectify
- ft_preproc_rereference
- ft_preproc_resample
- ft_preproc_smooth
- ft_preproc_standardize
dependencies/fieldtrip-20180201/preproc/private
- defaultId
- filter_with_correction
- firws
- firwsord
- fir_df
- fir_filterdcpadded
- fixname
- ft_notification
- ft_platform_supports
- ft_warning
- invfirwsord
- istrue
- kaiserbeta
- minphaserceps
- plotfresp
- print_once
- windows
dependencies/fieldtrip-20180201/private
- align_ijk2xyz
- channelposition
- coordsys2label
- cornerpoints
- determine_griddim
- dist
- elec1020_follow
- elec1020_fraction
- elec1020_locate
- elproj
- find_nearest
- find_vertex_neighbours
- fixname
- fixpos
- ft_fetch_sens
- ft_getuserfun
- getdimord
- getdimsiz
- getsubfield
- grid2transform
- icosahedron
- icosahedron162
- icosahedron2562
- icosahedron42
- icosahedron642
- interp_gridded
- interp_ungridded
- iscompatwrapper
- isfunction
- issubfield
- ksphere
- lmoutr
- lmoutrn
- loadvar
- mergeconfig
- mesh2edge
- moveinward
- msphere
- ndgrid
- normals
- offset2time
- parameterselection
- pinvNx2
- plinprojn
- pntdist
- poly2tri
- prepare_mesh_cortexhull
- prepare_mesh_headshape
- prepare_mesh_hexahedral
- prepare_mesh_manual
- prepare_mesh_segmentation
- prepare_mesh_tetrahedral
- preproc
- projecttri
- project_elec
- ptriproj
- ptriprojn
- ptriside
- refine
- remove_double_vertices
- retriangulate
- rmsubfield
- rollback_provenance
- rotate
- routlm
- scale
- select3d
- setsubfield
- setviewpoint
- smudge
- solid_angle
- strel_bol
- surfaceorientation
- time2offset
- translate
- triangulate_seg
- tritrisect
- undobalancing
- volumefillholes
- volumeflip
- volumepermute
- volumesmooth
- volumethreshold
- warp_dykstra2012
- warp_fsaverage
- warp_hermes2010
dependencies/fieldtrip-20180201/utilities
- copyfields
- ft_channelcombination
- ft_channelselection
- ft_checkconfig
- ft_checkdata
- ft_checkopt
- ft_convert_coordsys
- ft_datatype
- ft_datatype_comp
- ft_datatype_dip
- ft_datatype_freq
- ft_datatype_headmodel
- ft_datatype_mvar
- ft_datatype_parcellation
- ft_datatype_raw
- ft_datatype_segmentation
- ft_datatype_sens
- ft_datatype_source
- ft_datatype_spike
- ft_datatype_timelock
- ft_datatype_volume
- ft_debug
- ft_determine_coordsys
- ft_error
- ft_getopt
- ft_hash
- ft_hastoolbox
- ft_headcoordinates
- ft_info
- ft_keyval2cfg
- ft_notice
- ft_platform_supports
- ft_postamble
- ft_preamble
- ft_progress
- ft_scalingfactor
- ft_selectdata
- ft_selectdata_old
- ft_setopt
- ft_struct2double
- ft_trackusage
- ft_transform_geometry
- ft_version
- ft_warning
- ft_warp_apply
- ft_warp_error
- ft_warp_optim
- getsubfield
- hasyokogawa
- issubfield
- istrue
- keepfields
- match_str
- memtic
- memtoc
- nearest
- removefields
- renamefields
- rmsubfield
- setsubfield
- tokenize
dependencies/fieldtrip-20180201/utilities/private
- align_ctf2acpc
- align_neuromag2acpc
- avgoverdim
- avgoverlabel
- base64encode
- channelposition
- convert_segmentationstyle
- coordsys2label
- cornerpoints
- dataset2files
- debugCleanup
- defaultId
- determine_segmentationstyle
- dimindex
- dimlength
- fixdimord
- fixinside
- fixname
- fixoldorg
- fixpos
- fixsampleinfo
- fixsegmentation
- ft_findcfg
- ft_notification
- ft_postamble_debug.m
- ft_postamble_history.m
- ft_postamble_previous.m
- ft_postamble_provenance.m
- ft_postamble_randomseed.m
- ft_postamble_savevar.m
- ft_postamble_trackconfig.m
- ft_preamble_debug.m
- ft_preamble_init.m
- ft_preamble_loadvar.m
- ft_preamble_provenance.m
- ft_preamble_randomseed.m
- ft_preamble_trackconfig.m
- ft_struct2json
- ft_urlread
- getaddress
- getdatfield
- getdimord
- getdimsiz
- gethostname
- getusername
- ignorefields
- individual2sn
- labelcmb2indx
- leaveoneout
- lmoutr
- lmoutrn
- loadvar
- memprofile
- mergeconfig
- mxSerialize
- pinvNx2
- plinprojn
- pos2dim
- pos2transform
- printor
- project_elec
- ptriprojn
- randomseed
- rotate
- savevar
- scale
- selfromraw
- seloverdim
- selparam
- smartinput
- sn2individual
- time2offset
- traditional
- translate
- undobalancing
- unparcellate
- volumeflip
- volumepermute
- volumesmooth
- volumethreshold
private
- arg
- arg_define
- arg_deprecated
- arg_diff
- arg_extract
- arg_guidialog
- arg_guipanel
- arg_issuereport
- arg_nogui
- arg_norep
- arg_report
- arg_setdirect
- arg_specifier
- arg_sub
- arg_subswitch
- arg_subtoggle
- arg_supported
- arg_tostring
- arg_tovals
- arg_toworkspace
- cached_argument
- check_range
- check_shape
- check_type
- combine_structs
- deduce_shape
- deduce_type
- determine_caller
- disp_once
- expand_arg
- expand_argsub
- expand_argsubswitch
- expand_argsubtoggle
- fast_setdiff
- finputcheck
- flatten_structs
- generate_source
- hlp_microcache
- hlp_nanocache
- hlp_tostring
- inputgui
- override_fields
- override_flags
- parse_help
- supergui
- validate_varnames
- write_wobj
Versions that use the GitHub default branch cannot be downloaded
Version | Published | Release Notes | |
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0.1.2.1 | Fixed a minor bug regarding channel labels. Check the commit for the details.
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0.1.2 | Added support for digitizing using the motion capture method. See Shirazi and Huang 2019 for more information. |
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0.1.1 |
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