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version 1.0.1 (24.2 MB) by Jinghao Lu
A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.


Updated 25 Feb 2021

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A MINiscope 1-photon-based Calcium Imaging Signal Extraction PIPEline.

MIN1PIPE is a fully automatic, Matlab-based toolbox, solving the full range problems in 1-photon calcium imaging in one package: data enhancement → movement morrection → signal extraction. It requires minimal parameter-tuning and integrates the semi-auto options. Each inidividual module can also be easily adapted for the 2-photon imaging setting.

Cite As

Jinghao Lu (2021). MIN1PIPE (, GitHub. Retrieved .

Lu, Jinghao, et al. “MIN1PIPE: A Miniscope 1-Photon-Based Calcium Imaging Signal Extraction Pipeline.” Cell Reports, vol. 23, no. 12, Elsevier BV, June 2018, pp. 3673–84, doi:10.1016/j.celrep.2018.05.062.

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MATLAB Release Compatibility
Created with R2018a
Compatible with R2018a to R2019a
Platform Compatibility
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