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qMRLab

version 2.0.1 (20.7 MB) by Agah Karakuzu
Quantitative Magnetic Resonance Imaging Made Easy with qMRLab: Use GUI or CLI to fit and simulate a myriad of qMRI models.

24 Downloads

Updated 03 Apr 2021

From GitHub

View license on GitHub

An intuitive tool for data fitting, plotting, simulation and protocol optimization for a myriad of different quantitative models: T1 (IR, VFA) & T2 (MWF) Relaxometry, Magnetization Transfer (MTsat and qMT methods), Field Mapping (B1 and B0), diffusion (DTI, NODDI, CHARMED) and more!

You can read the docs,
http://qmrlab.readthedocs.io/

Use our Docker image to make qMR processing portable,
docker pull neuropoly/qmrlab
https://hub.docker.com/r/neuropoly/qmrlab/

Download sample qMRI data,
https://osf.io/tmdfu/

RRID:SCR_016256

https://www.neuro.polymtl.ca/

Cite As

Agah Karakuzu (2021). qMRLab (https://github.com/qMRLab/qMRLab), GitHub. Retrieved .

Comments and Ratings (1)

Tanguy DUVAL

MATLAB Release Compatibility
Created with R2015b
Compatible with R2014b and later releases
Platform Compatibility
Windows macOS Linux

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Deploy/Compile

Deploy/Documentation

Deploy/Documentation/NotebookGen

External/AMICO/AMICO_matlab

External/AMICO/AMICO_matlab/kernels

External/AMICO/AMICO_matlab/models

External/AMICO/AMICO_matlab/optimization

External/AMICO/AMICO_matlab/other

External/AMICO/SPAMS

External/AMICO/SPAMS/build

External/AMICO/SPAMS/src_release

External/AMICO/SPAMS/test_release

External/Faddeeva_MATLAB

External/MOcov/MOcov

External/MOcov/MOcov/@MOcovMFile

External/MOcov/MOcov/@MOcovMFileCollection

External/MOcov/MOcov/@MOcovProgressMonitor

External/MOcov/tests

External/MOxUnit/MOxUnit

External/MOxUnit/MOxUnit/@MOxUnitErroredTestOutcome

External/MOxUnit/MOxUnit/@MOxUnitFailedTestOutcome

External/MOxUnit/MOxUnit/@MOxUnitFunctionHandleTestCase

External/MOxUnit/MOxUnit/@MOxUnitMatlabUnitWrapperTestCase

External/MOxUnit/MOxUnit/@MOxUnitPassedTestOutcome

External/MOxUnit/MOxUnit/@MOxUnitSkippedTestOutcome

External/MOxUnit/MOxUnit/@MOxUnitTestCase

External/MOxUnit/MOxUnit/@MOxUnitTestNode

External/MOxUnit/MOxUnit/@MOxUnitTestOutcome

External/MOxUnit/MOxUnit/@MOxUnitTestReport

External/MOxUnit/MOxUnit/@MOxUnitTestSuite

External/MOxUnit/MOxUnit/util

External/MOxUnit/tests

External/NIfTI_20140122

External/NODDI_toolbox_v1.0/ParforProgMonv2

External/NODDI_toolbox_v1.0/fitting

External/NODDI_toolbox_v1.0/models

External/NODDI_toolbox_v1.0/models/watson

External/SOMA

External/blochSim

External/centerOfMass

External/comp_struct

External/consolidator

External/cprintf

External/crossing

External/dicm2nii

External/gencode

External/getGitInfo

External/imtool3D_td

External/imtool3D_td/External

External/imtool3D_td/External/bids-matlab/+bids

External/imtool3D_td/External/bids-matlab/+bids/+util

External/imtool3D_td/External/bids-matlab/+bids/private

External/imtool3D_td/External/dndcontrol

External/imtool3D_td/External/interpmask

External/imtool3D_td/External/mask2poly

External/imtool3D_td/External/reduce_poly

External/imtool3D_td/src

External/jsonlab-master

External/jsonlab-master/examples

External/knkutils

External/laplacianUnwrap

External/loadminc

External/mppca_denoise

External/nansuite

External/parTicToc

External/parfor_progress

External/plotregion

External/rician

External/smoothn

External/sort_nat

External/sunwrap

External/txt2mat

Test

Test/Common/pulse

Test/Common/sim

Test/Models

Test/Models_Functions/IRfun

Test/Models_Functions/SIRFSEfun

Test/Models_Functions/SPGRfun

Test/Models_Functions/SPGRfun/functions

Test/Models_Functions/bSSFPfun

Test/MoxUnitCompatible

Test/MoxUnitCompatible/BatchExamplePart2

Test/MoxUnitCompatible/BatchMatlabOnly

Test/MoxUnitCompatible/equation_test

Test/MoxUnitCompatible/other

Test/MoxUnitCompatible/quickMoxTests

Test/MoxUnitCompatible/simTests

Test/UnitTests/Model_Functions/QSM

src/Addons/SimMonteCarlo_Diffusion

src/Addons/SimMonteCarlo_Diffusion/axonpacking/code

src/Addons/SimProtocolOpt

src/Addons/SimRnd

src/Addons/SimVary

src/Addons/SingleVoxel

src/Common

src/Common/GUI

src/Common/RandPolyhedron

src/Common/blochsim

src/Common/lineshape

src/Common/pulse

src/Common/sim

src/Common/tools

src/Common/tools/FileBrowser

src/Common/tools/GUIfun

src/Models/Diffusion

src/Models/FieldMaps

src/Models/Magnetization_transfer

src/Models/Noise

src/Models/Processing

src/Models/QSM

src/Models/T1_relaxometry

src/Models/T2_relaxometry

src/Models/UnderDevelopment

src/Models_Functions/AFIfun

src/Models_Functions/AMICOfun

src/Models_Functions/CHARMEDfun

src/Models_Functions/DTIfun

src/Models_Functions/Diffusion

src/Models_Functions/Filter

src/Models_Functions/IRfun

src/Models_Functions/MP2RAGE/func

src/Models_Functions/MTSATfun

src/Models_Functions/MTVfun

src/Models_Functions/MWF

src/Models_Functions/MWF/met2_eva

src/Models_Functions/NODDIfun

src/Models_Functions/Noise

src/Models_Functions/QSM

src/Models_Functions/SIRFSEfun

src/Models_Functions/SIRFSEfun/functions

src/Models_Functions/SPGRfun

src/Models_Functions/SPGRfun/functions

src/Models_Functions/bSSFPfun

src/Models_Functions/bSSFPfun/functions

src/Models_Functions/vfa_t1

External/gencode/examples

External/rician