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Import SBML file with function definitions into SimBiology

version 1.1.0.1 (8.98 KB) by Jeremy Huard
Functions to import SBML files containing function definitions into SimBiology.

261 Downloads

Updated 01 Sep 2016

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These functions allow you to import SBML files containing function definitions into SimBiology.
Two methods are available:
- sbmlimportFunExternal
This function saves each function definition as separated MATLAB function in the current directory.
The resulting SimBiology model supports the 'Model acceleration' mode.
Function definitions containing the MathML function 'piecewise' are also supported.
In that case, to ensure that the ODE solver registers the transitions events are added to the SimBiology model.
- sbmlimportFunReplace
This function replaces all function calls in the reaction rates by the associated expressions.
The resulting SimBiology model supports the 'Model acceleration' mode.
It does not support the use of the MathML function 'piecewise' in the function definitions.
Usage:
sbmlimportFunExternal()
sbmlimportFunExternal(filename)
sbmlimportFunReplace()
sbmlimportFunReplace(filename)

Cite As

Jeremy Huard (2021). Import SBML file with function definitions into SimBiology (https://www.mathworks.com/matlabcentral/fileexchange/51551-import-sbml-file-with-function-definitions-into-simbiology), MATLAB Central File Exchange. Retrieved .

MATLAB Release Compatibility
Created with R2015a
Compatible with any release
Platform Compatibility
Windows macOS Linux
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