niftiwrite changes the axis of 3D images

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banikr
banikr am 25 Aug. 2019
Kommentiert: Anand Joshi am 15 Jun. 2023
After performing some image processing in a 3D .nii format nifti image, I am using niftiwrite function to save it. But the nifti image is being saved in opposite axis like the anterior axis is being saved as posterior and vice versa, and the left to right ...
I am using itk-snap to visualize the saved image.
  6 Kommentare
Jacob Bunyamin
Jacob Bunyamin am 14 Feb. 2023
I tried load and re-save but it did not work. Permute and flip did not work either for me
Anand Joshi
Anand Joshi am 15 Jun. 2023
Are you using info option when you use niftiwrite?You can get it using niftiinfo and then use it for niftiwrite.

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Antworten (1)

Anmol Dhiman
Anmol Dhiman am 28 Aug. 2019
  2 Kommentare
Charly Girot
Charly Girot am 3 Mär. 2021
Thanks for the tool but this does not answer the issue he was referring to
Zahra
Zahra am 10 Mär. 2023
I have exactly the same problem. I would be grateful if someone finds a solution to this problem share it with me.

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