Train Classifier Using Hyperparameter Optimization in Classification Learner App
This example shows how to tune hyperparameters of a classification support vector machine (SVM) model by using hyperparameter optimization in the Classification Learner app. Compare the test set performance of the trained optimizable SVM to that of the best-performing preset SVM model.
In the MATLAB® Command Window, load the
ionospheredata set, and create a table containing the data.
load ionosphere tbl = array2table(X); tbl.Y = Y;
Open Classification Learner. Click the Apps tab, and then click the arrow at the right of the Apps section to open the apps gallery. In the Machine Learning and Deep Learning group, click Classification Learner.
On the Classification Learner tab, in the File section, select New Session > From Workspace.
In the New Session from Workspace dialog box, select
tblfrom the Data Set Variable list. The app selects the response and predictor variables. The default response variable is
Y. The default validation option is 5-fold cross-validation, to protect against overfitting.
In the Test section, click the check box to set aside a test data set. Specify to use
15percent of the imported data as a test set.
To accept the options and continue, click Start Session.
Train all preset SVM models. On the Classification Learner tab, in the Models section, click the arrow to open the gallery. In the Support Vector Machines group, click All SVMs. In the Train section, click Train All and select Train All. The app trains one of each SVM model type, as well as the default fine tree model, and displays the models in the Models pane.
If you have Parallel Computing Toolbox™, then the app has the Use Parallel button toggled on by default. After you click Train All and select Train All or Train Selected, the app opens a parallel pool of workers. During this time, you cannot interact with the software. After the pool opens, you can continue to interact with the app while models train in parallel.
If you do not have Parallel Computing Toolbox, then the app has the Use Background Training check box in the Train All menu selected by default. After you click to train models, the app opens a background pool. After the pool opens, you can continue to interact with the app while models train in the background.
The app displays a validation confusion matrix for the first SVM model (model 2.1). Blue values indicate correct classifications, and red values indicate incorrect classifications. The Models pane on the left shows the validation accuracy for each model.
Validation introduces some randomness into the results. Your model validation results can vary from the results shown in this example.
Select an optimizable SVM model to train. On the Classification Learner tab, in the Models section, click the arrow to open the gallery. In the Support Vector Machines group, click Optimizable SVM.
Select the model hyperparameters to optimize. In the Summary tab, you can select Optimize check boxes for the hyperparameters that you want to optimize. By default, all the check boxes for the available hyperparameters are selected. For this example, clear the Optimize check boxes for Kernel function and Standardize data. By default, the app disables the Optimize check box for Kernel scale whenever the kernel function has a fixed value other than
Gaussian. Select a
Gaussiankernel function, and select the Optimize check box for Kernel scale.
Train the optimizable model. In the Train section of the Classification Learner tab, click Train All and select Train Selected.
The app displays a Minimum Classification Error Plot as it runs the optimization process. At each iteration, the app tries a different combination of hyperparameter values and updates the plot with the minimum validation classification error observed up to that iteration, indicated in dark blue. When the app completes the optimization process, it selects the set of optimized hyperparameters, indicated by a red square. For more information, see Minimum Classification Error Plot.
The app lists the optimized hyperparameters in both the Optimization Results section to the right of the plot and the Optimizable SVM Model Hyperparameters section of the model Summary tab.
In general, the optimization results are not reproducible.
Compare the trained preset SVM models to the trained optimizable model. In the Models pane, the app highlights the highest Accuracy (Validation) by outlining it in a box. In this example, the trained optimizable SVM model outperforms the six preset models.
A trained optimizable model does not always have a higher accuracy than the trained preset models. If a trained optimizable model does not perform well, you can try to get better results by running the optimization for longer. On the Classification Learner tab, in the Options section, click Optimizer. In the dialog box, increase the Iterations value. For example, you can double-click the default value of
30and enter a value of
60. Then click Save and Apply. The options will be applied to future optimizable models created using the Models gallery.
Because hyperparameter tuning often leads to overfitted models, check the performance of the optimizable SVM model on a test set and compare it to the performance of the best preset SVM model. Use the data you reserved for testing when you imported data into the app.
First, in the Models pane, click the star icons next to the Medium Gaussian SVM model and the Optimizable SVM model.
For each model, select the model in the Models pane. In the Test section of the Classification Learner tab, click Test All and then select Test Selected. The app computes the test set performance of the model trained on the rest of the data, namely the training and validation data.
Sort the models based on the test set accuracy. In the Models pane, open the Sort by list and select
In this example, the trained optimizable model still outperforms the trained preset model on the test set data. However, neither model has a test accuracy as high as its validation accuracy.
Visually compare the test set performance of the models. For each of the starred models, select the model in the Models pane. On the Classification Learner tab, in the Plots section, click the arrow to open the gallery, and then click Confusion Matrix (Test) in the Test Results group.
Rearrange the layout of the plots to better compare them. First, close the plot and summary tabs for all models except Model 2.5 and Model 3. Then, in the Plots section, click the Layout button and select Compare models. Click the Hide plot options button at the top right of the plots to make more room for the plots.
To return to the original layout, you can click the Layout button and select Single model (Default).
- Hyperparameter Optimization in Classification Learner App
- Train Classification Models in Classification Learner App
- Select Data for Classification or Open Saved App Session
- Choose Classifier Options
- Assess Classifier Performance in Classification Learner
- Export Classification Model to Predict New Data
- Bayesian Optimization Workflow