# CompactClassificationTree

Compact classification tree

## Description

Compact version of a classification tree (of class `ClassificationTree`

). The compact version does not include the data for
training the classification tree. Therefore, you cannot perform some tasks with a
compact classification tree, such as cross validation. Use a compact classification tree
for making predictions (classifications) of new data.

## Creation

Create a `CompactClassificationTree`

object from a full `ClassificationTree`

model object by using `compact`

.

## Properties

`CategoricalPredictors`

— Indices of categorical predictors

vector of positive integers | `[]`

This property is read-only.

Categorical predictor
indices, specified as a vector of positive integers. `CategoricalPredictors`

contains index values indicating that the corresponding predictors are categorical. The index
values are between 1 and `p`

, where `p`

is the number of
predictors used to train the model. If none of the predictors are categorical, then this
property is empty (`[]`

).

**Data Types: **`single`

| `double`

`CategoricalSplit`

— Categorical splits

`n`

-by-2 cell array

This property is read-only.

Categorical splits, returned as an `n`

-by-2 cell array, where
`n`

is the number of categorical splits in
`tree`

. Each row in `CategoricalSplit`

gives
left and right values for a categorical split. For each branch node with categorical
split `j`

based on a categorical predictor variable
`z`

, the left child is chosen if `z`

is in
`CategoricalSplit(j,1)`

and the right child is chosen if
`z`

is in `CategoricalSplit(j,2)`

. The splits are
in the same order as nodes of the tree. Nodes for these splits can be found by running
`cuttype`

and selecting `'categorical'`

cuts from
top to bottom.

**Data Types: **`cell`

`Children`

— Numbers of the child nodes for each node

`n`

-by-2 array

This property is read-only.

Numbers of the child nodes for each node in `tree`

, returned as an
`n`

-by-2 array containing the numbers of the child nodes for each
node in , where `n`

is the number of nodes. Leaf nodes have child node
`0`

.

**Data Types: **`double`

`ClassCount`

— Class counts

*n*-by-*k* array

This property is read-only.

Class counts for the nodes in `tree`

, returned as an
*n*-by-*k* array, where *n* is
the number of nodes and *k* is the number of classes. For any node
number `i`

, the class counts `ClassCount(i,:)`

are
counts of observations (from the data used in fitting the tree) from each class
satisfying the conditions for node `i`

.

**Data Types: **`double`

`ClassNames`

— List of elements in `Y`

with duplicates removed

categorical array | cell array of character vectors | character array | logical vector | numeric vector

This property is read-only.

List of the elements in `Y`

with duplicates removed, returned as a
categorical array, cell array of character vectors, character array, logical vector, or
a numeric vector. `ClassNames`

has the same data type as the data in
the argument `Y`

. (The software treats string arrays as cell arrays of character
vectors.)

**Data Types: **`double`

| `logical`

| `char`

| `cell`

| `categorical`

`ClassProbability`

— Class probabilities

`n`

-by-*k* array

This property is read-only.

Class probabilities for the nodes in `tree`

, returned as an
`n`

-by-`k`

array, where `n`

is
the number of nodes and `k`

is the number of classes. For any node
number `i`

, the class probabilities
`ClassProbability(i,:)`

are the estimated probabilities for each
class for a point satisfying the conditions for node `i`

.

**Data Types: **`double`

`Cost`

— Cost of classifying a point into class `j`

when its true class is `i`

square matrix

Cost of classifying a point into class `j`

when its true class is
`i`

, returned as a square matrix. The rows of
`Cost`

correspond to the true class and the columns correspond to
the predicted class. The order of the rows and columns of `Cost`

corresponds to the order of the classes in `ClassNames`

. The number
of rows and columns in `Cost`

is the number of unique classes in the
response.

**Data Types: **`double`

`CutCategories`

— Categories used at branches

`n`

-by-2 cell array

This property is read-only.

Categories used at branches in `tree`

, returned as an
`n`

-by-2 cell array, where `n`

is the number of
nodes. For each branch node `i`

based on a categorical predictor
variable `X`

, the left child is chosen if `X`

is among
the categories listed in `CutCategories{i,1}`

, and the right child is
chosen if `X`

is among those listed in
`CutCategories{i,2}`

. Both columns of
`CutCategories`

are empty for branch nodes based on continuous
predictors and for leaf nodes.

`CutPoint`

contains the cut points for
`'continuous'`

cuts, and `CutCategories`

contains
the set of categories.

**Data Types: **`cell`

`CutPoint`

— Values used as cut points

`n`

-element vector

This property is read-only.

Values used as cut points in `tree`

, returned as an
`n`

-element vector, where `n`

is the number of
nodes. For each branch node `i`

based on a continuous predictor
variable `X`

, the left child is chosen if
`X<CutPoint(i)`

and the right child is chosen if
`X>=CutPoint(i)`

. `CutPoint`

is
`NaN`

for branch nodes based on categorical predictors and for leaf
nodes.

`CutPoint`

contains the cut points for
`'continuous'`

cuts, and `CutCategories`

contains
the set of categories.

**Data Types: **`double`

`CutPredictor`

— Names of the variables used for branching in each node

cell array

This property is read-only.

Names of the variables used for branching in each node in `tree`

, returned as an `n`

-element cell array, where `n`

is the number of nodes. These variables are sometimes known as *cut variables*. For leaf nodes, `CutPredictor`

contains an empty character vector.

`CutPoint`

contains the cut points for `'continuous'`

cuts, and `CutCategories`

contains the set of categories.

**Data Types: **`cell`

`CutPredictorIndex`

— Indices of variables used for branching in each node

`n`

-element array

This property is read-only.

Indices of variables used for branching in each node in `tree`

,
returned as an `n`

-element array, where `n`

is the
number of nodes. For more information, see `CutPredictor`

.

**Data Types: **`double`

`CutType`

— Type of cut at each node

`n`

-element cell array

This property is read-only.

Type of cut at each node in `tree`

, returned as an
`n`

-element cell array, where `n`

is the number of
nodes. For each node `i`

, `CutType{i}`

is:

`'continuous'`

— If the cut is defined in the form`X < v`

for a variable`X`

and cut point`v`

.`'categorical'`

— If the cut is defined by whether a variable`X`

takes a value in a set of categories.`''`

— If`i`

is a leaf node.

`CutPoint`

contains the cut points for
`'continuous'`

cuts, and `CutCategories`

contains
the set of categories.

**Data Types: **`cell`

`ExpandedPredictorNames`

— Expanded predictor names

cell array of character vectors

This property is read-only.

Expanded predictor names, returned as a cell array of character vectors.

If the model uses encoding for categorical variables, then
`ExpandedPredictorNames`

includes the names that describe the
expanded variables. Otherwise, `ExpandedPredictorNames`

is the same as
`PredictorNames`

.

**Data Types: **`cell`

`IsBranchNode`

— Indicator of branch nodes

logical vector

This property is read-only.

Indicator of branch nodes, returned as an `n`

-element logical vector that is `true`

for each branch node and `false`

for each leaf node of `tree`

.

**Data Types: **`logical`

`NodeClass`

— Name of most probably class in each node

cell array

This property is read-only.

Name of most probably class in each node of `tree`

, returned as a cell array with `n`

elements, where `n`

is the number of nodes in the tree. Each element of this array is a character vector equal to one of the class names in `ClassNames`

.

**Data Types: **`cell`

`NodeError`

— Misclassification probability for each node

`n`

-element vector

This property is read-only.

Misclassification probability for each node in `tree`

, returned as an `n`

-element vector, where `n`

is the number of nodes in the tree.

**Data Types: **`double`

`NodeProbability`

— Proportion of observations in original data that satisfy the conditions for the node

`n`

-element vector

This property is read-only.

Proportion of observations in original data that satisfy the conditions for each node in `tree`

, returned as an `n`

-element vector, where `n`

is the number of nodes in the tree. The `NodeProbability`

values are adjusted for any prior probabilities assigned to each class.

**Data Types: **`double`

`NodeRisk`

— Impurity of nodes

`n`

-element vector

This property is read-only.

Impurity of each node in `tree`

, weighted by the node probability, returned as an `n`

-element vector, where `n`

is the number of nodes in the tree. The measure of impurity is the Gini index or deviance for the node, weighted by the node probability. If the tree is grown by twoing, the risk for each node is zero.

**Data Types: **`double`

`NodeSize`

— Size of nodes

`n`

-element vector

This property is read-only.

Size of the nodes in `tree`

, returned as an `n`

-element vector, where `n`

is the number of nodes in the tree. The size of a node is the number of observations from the data used to create the tree that satisfy the conditions for the node.

**Data Types: **`double`

`NumNodes`

— Number of nodes

positive integer

This property is read-only.

The number of nodes in `tree`

, returned as a positive integer.

**Data Types: **`double`

`Parent`

— Number of parents of nodes

`n`

-element vector

This property is read-only.

Number of parents of each node in `tree`

, returned as an `n`

-element integer vector, where `n`

is the number of nodes in the tree. The parent of the root node is `0`

.

**Data Types: **`double`

`PredictorNames`

— Predictor names

cell array of character vectors

This property is read-only.

Predictor names, specified as a cell array of character vectors. The order of the
entries in `PredictorNames`

is the same as in the training data.

**Data Types: **`cell`

`Prior`

— Prior probabilities for each class

`m`

-element vector

Prior probabilities for each class, returned as an `m`

-element
vector, where `m`

is the number of unique classes in the response. The
order of the elements of `Prior`

corresponds to the order of the
classes in `ClassNames`

.

**Data Types: **`double`

`PruneAlpha`

— Alpha values for pruning the tree

real vector

Alpha values for pruning the tree, returned as a real vector with one element per pruning level. If the pruning level ranges from 0 to *M*, then `PruneAlpha`

has *M* + 1 elements sorted in ascending order. `PruneAlpha(1)`

is for pruning level 0 (no pruning), `PruneAlpha(2)`

is for pruning level 1, and so on.

For the meaning of the *ɑ* values, see How Decision Trees Create a Pruning Sequence.

**Data Types: **`double`

`PruneList`

— Pruning levels of each node in tree

integer vector

Pruning levels of each node in the tree, returned as an integer vector with `NumNodes`

elements. The pruning levels range from 0 (no pruning) to *M*, where *M* is the distance between the deepest leaf and the root node.

For details, see Pruning.

**Data Types: **`double`

`ResponseName`

— Name of the response variable

character vector

This property is read-only.

Name of the response variable, returned as a character vector.

**Data Types: **`char`

`ScoreTransform`

— Function for transforming scores

function handle | name of a built-in transformation function | `'none'`

Function for transforming scores, specified as a function handle or the name of a built-in transformation function. `'none'`

means no transformation; equivalently, `'none'`

means `@(x)x`

. For a list of built-in transformation functions and the syntax of custom transformation functions, see `fitctree`

.

Add or change a `ScoreTransform`

function using dot notation:

ctree.ScoreTransform = 'function' % or ctree.ScoreTransform = @function

**Data Types: **`char`

| `string`

| `function_handle`

`SurrogateCutCategories`

— Categories used for surrogate splits

`n`

-element cell array

This property is read-only.

Categories used for surrogate splits, returned as an `n`

-element cell
array, where `n`

is the number of nodes in `tree`

.
For each node `k`

, `SurrogateCutCategories{k}`

is a
cell array. The length of `SurrogateCutCategories{k}`

is equal to the
number of surrogate predictors found at this node. Every element of
`SurrogateCutCategories{k}`

is either an empty character vector for
a continuous surrogate predictor, or is a two-element cell array with categories for a
categorical surrogate predictor. The first element of this two-element cell array lists
categories assigned to the left child by this surrogate split and the second element of
this two-element cell array lists categories assigned to the right child by this
surrogate split. The order of the surrogate split variables at each node is matched to
the order of variables in `SurrogateCutVar`

. The optimal-split variable
at this node does not appear. For nonbranch (leaf) nodes,
`SurrogateCutCategories`

contains an empty cell.

**Data Types: **`cell`

`SurrogateCutFlip`

— Numeric cut assignments used for surrogate splits

`n`

-element cell array

This property is read-only.

Numeric cut assignments used for surrogate splits in `tree`

, returned as an `n`

-element cell array, where `n`

is the number of nodes in `tree`

. For each node `k`

, `SurrogateCutFlip{k}`

is a numeric vector. The length of `SurrogateCutFlip{k}`

is equal to the number of surrogate predictors found at this node. Every element of `SurrogateCutFlip{k}`

is either zero for a categorical surrogate predictor, or a numeric cut assignment for a continuous surrogate predictor. The numeric cut assignment can be either –1 or +1. For every surrogate split with a numeric cut *C* based on a continuous predictor variable *Z*, the left child is chosen if *Z*<*C* and the cut assignment for this surrogate split is +1, or if *Z*≥*C* and the cut assignment for this surrogate split is –1. Similarly, the right child is chosen if *Z*≥*C* and the cut assignment for this surrogate split is +1, or if *Z*<*C* and the cut assignment for this surrogate split is –1. The order of the surrogate split variables at each node is matched to the order of variables in `SurrogateCutPredictor`

. The optimal-split variable at this node does not appear. For nonbranch (leaf) nodes, `SurrogateCutFlip`

contains an empty array.

**Data Types: **`cell`

`SurrogateCutPoint`

— Numeric values used for surrogate splits

`n`

-element cell array

This property is read-only.

Numeric values used for surrogate splits in `tree`

, returned as an
`n`

-element cell array, where `n`

is the number of
nodes in `tree`

. For each node `k`

,
`SurrogateCutPoint{k}`

is a numeric vector. The length of
`SurrogateCutPoint{k}`

is equal to the number of surrogate
predictors found at this node. Every element of `SurrogateCutPoint{k}`

is either `NaN`

for a categorical surrogate predictor, or a numeric cut
for a continuous surrogate predictor. For every surrogate split with a numeric cut
*C* based on a continuous predictor variable *Z*,
the left child is chosen if *Z*<*C* and `SurrogateCutFlip`

for this surrogate split is
+1, or if *Z*≥*C* and
`SurrogateCutFlip`

for this surrogate split is –1. Similarly, the
right child is chosen if *Z*≥*C* and `SurrogateCutFlip`

for this surrogate split is
+1, or if *Z*<*C* and `SurrogateCutFlip`

for this surrogate split is
–1. The order of the surrogate split variables at each node is matched to the order of
variables returned by `SurrogateCutPredictor`

. The optimal-split
variable at this node does not appear. For nonbranch (leaf) nodes,
`SurrogateCutPoint`

contains an empty cell.

**Data Types: **`cell`

`SurrogateCutPredictor`

— Names of variables used for surrogate splits in each node

`n`

-element cell array

This property is read-only.

Names of the variables used for surrogate splits in each node in
`tree`

, returned as an `n`

-element cell array,
where `n`

is the number of nodes in `tree`

. Every
element of `SurrogateCutPredictor`

is a cell array with the names of
the surrogate split variables at this node. The variables are sorted by the predictive
measure of association with the optimal predictor in the descending order, and only
variables with the positive predictive measure are included. The optimal-split variable
at this node does not appear. For nonbranch (leaf) nodes,
`SurrogateCutPredictor`

contains an empty cell.

**Data Types: **`cell`

`SurrogateCutType`

— Types of surrogate splits at each node

`n`

-element cell array

This property is read-only.

Types of surrogate splits at each node in `tree`

, returned as an
`n`

-element cell array, where `n`

is the number of
nodes in `tree`

. For each node `k`

,
`SurrogateCutType{k}`

is a cell array with the types of the
surrogate split variables at this node. The variables are sorted by the predictive
measure of association with the optimal predictor in the descending order, and only
variables with the positive predictive measure are included. The order of the surrogate
split variables at each node is matched to the order of variables in
`SurrogateCutPredictor`

. The optimal-split variable at this node
does not appear. For nonbranch (leaf) nodes, `SurrogateCutType`

contains an empty cell. A surrogate split type can be either
`'continuous'`

if the cut is defined in the form
`Z`

<`V`

for a variable `Z`

and
cut point `V`

or `'categorical'`

if the cut is defined
by whether `Z`

takes a value in a set of categories.

**Data Types: **`cell`

`SurrogatePredictorAssociation`

— Predictive measures of association for surrogate splits

`n`

-element cell array

This property is read-only.

Predictive measures of association for surrogate splits in `tree`

, returned as an `n`

-element cell array, where `n`

is the number of nodes in `tree`

. For each node `k`

, `SurrogatePredictorAssociation{k}`

is a numeric vector. The length of `SurrogatePredictorAssociation{k}`

is equal to the number of surrogate predictors found at this node. Every element of `SurrogatePredictorAssociation{k}`

gives the predictive measure of association between the optimal split and this surrogate split. The order of the surrogate split variables at each node is the order of variables in `SurrogateCutPredictor`

. The optimal-split variable at this node does not appear. For nonbranch (leaf) nodes, `SurrogatePredictorAssociation`

contains an empty cell.

**Data Types: **`cell`

## Object Functions

`compareHoldout` | Compare accuracies of two classification models using new data |

`edge` | Classification edge for classification tree model |

`gather` | Gather properties of Statistics and Machine Learning Toolbox object from GPU |

`lime` | Local interpretable model-agnostic explanations (LIME) |

`loss` | Classification loss for classification tree model |

`margin` | Classification margins for classification tree model |

`nodeVariableRange` | Retrieve variable range of decision tree node |

`partialDependence` | Compute partial dependence |

`plotPartialDependence` | Create partial dependence plot (PDP) and individual conditional expectation (ICE) plots |

`predict` | Predict labels using classification tree model |

`predictorImportance` | Estimates of predictor importance for classification tree |

`shapley` | Shapley values |

`surrogateAssociation` | Mean predictive measure of association for surrogate splits in classification tree |

`update` | Update model parameters for code generation |

`view` | View classification tree |

## Examples

### Construct a Compact Classification Tree

Construct a compact classification tree for the Fisher iris data.

```
load fisheriris
tree = fitctree(meas,species);
ctree = compact(tree);
```

Compare the size of the resulting tree to that of the original tree.

t = whos('tree'); % t.bytes = size of tree in bytes c = whos('ctree'); % c.bytes = size of ctree in bytes [c.bytes t.bytes]

`ans = `*1×2*
5266 11931

The compact tree is smaller than the original tree.

## More About

### Impurity and Node Error

A decision tree splits nodes based on either *impurity*
or *node error*.

Impurity means one of several things, depending on your choice of the
`SplitCriterion`

name-value
argument:

Gini's Diversity Index (

`gdi`

) — The Gini index of a node is$$1-{\displaystyle \sum _{i}{p}^{2}(i)},$$

where the sum is over the classes

*i*at the node, and*p*(*i*) is the observed fraction of classes with class*i*that reach the node. A node with just one class (a*pure*node) has Gini index`0`

; otherwise, the Gini index is positive. So the Gini index is a measure of node impurity.Deviance (

`"deviance"`

) — With*p*(*i*) defined the same as for the Gini index, the deviance of a node is$$-{\displaystyle \sum _{i}p(i){\mathrm{log}}_{2}p(i)}.$$

A pure node has deviance

`0`

; otherwise, the deviance is positive.Twoing rule (

`"twoing"`

) — Twoing is not a purity measure of a node, but is a different measure for deciding how to split a node. Let*L*(*i*) denote the fraction of members of class*i*in the left child node after a split, and*R*(*i*) denote the fraction of members of class*i*in the right child node after a split. Choose the split criterion to maximize$$P(L)P(R){\left({\displaystyle \sum _{i}\left|L(i)-R(i)\right|}\right)}^{2},$$

where

*P*(*L*) and*P*(*R*) are the fractions of observations that split to the left and right, respectively. If the expression is large, the split made each child node purer. Similarly, if the expression is small, the split made each child node similar to each other and, therefore, similar to the parent node. The split did not increase node purity.Node error — The node error is the fraction of misclassified classes at a node. If

*j*is the class with the largest number of training samples at a node, the node error is1 –

*p*(*j*).

## Extended Capabilities

### C/C++ Code Generation

Generate C and C++ code using MATLAB® Coder™.

Usage notes and limitations:

To integrate the prediction of a classification tree model into Simulink

^{®}, you can use the ClassificationTree Predict block in the Statistics and Machine Learning Toolbox™ library or a MATLAB^{®}Function block with the`predict`

function.When you train a classification tree using

`fitctree`

, the following restrictions apply.The value of the

`'ScoreTransform'`

name-value pair argument cannot be an anonymous function. For fixed-point code generation, the`'ScoreTransform'`

value cannot be`'invlogit'`

.You cannot use surrogate splits; that is, the value of the

`'Surrogate'`

name-value pair argument must be`'off'`

.For fixed-point code generation and code generation with a coder configurer, the following additional restrictions apply.

Categorical predictors (

`logical`

,`categorical`

,`char`

,`string`

, or`cell`

) are not supported. You cannot use the`CategoricalPredictors`

name-value argument. To include categorical predictors in a model, preprocess them by using`dummyvar`

before fitting the model.Class labels with the

`categorical`

data type are not supported. Both the class label value in the training data (`Tbl`

or`Y`

) and the value of the`ClassNames`

name-value argument cannot be an array with the`categorical`

data type.

For more information, see Introduction to Code Generation.

### GPU Arrays

Accelerate code by running on a graphics processing unit (GPU) using Parallel Computing Toolbox™.

Usage notes and limitations:

The following object functions fully support GPU arrays:

The following object functions offer limited support for GPU arrays:

The object functions execute on a GPU if at least one of the following applies:

The model was fitted with GPU arrays.

The predictor data that you pass to the object function is a GPU array.

For more information, see Run MATLAB Functions on a GPU (Parallel Computing Toolbox).

## Version History

**Introduced in R2011a**

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